CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g32270

Gene name ZIP3

Module size 5 genes

NF 0.23

%ile 23.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.17 10.2 1.00 At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. O.I. H.G. S.X.
0.33 38.1 0.72 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO O.I. H.G. S.X.
0.29 30.3 0.77 At5g64100 836531 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFO O.I. H.G. S.X.
0.20 14.4 0.70 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. O.I. H.G. S.X.
0.20 14.4 0.75 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.17	10.2	1.00	At2g32270	817787	ZIP3	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.	O.I.	H.G.	S.X.
0.33	38.1	0.72	At2g44380	819045	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;PMO	O.I.	H.G.	S.X.
0.29	30.3	0.77	At5g64100	836531	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFO	O.I.	H.G.	S.X.
0.20	14.4	0.70	At5g43350	834353	PHT1	Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.	O.I.	H.G.	S.X.
0.20	14.4	0.75	At5g63600	836480	FLS5 (FLAVONOL SYNTHASE 5)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
931.6 100.0 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
411.7 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
115.3 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
57.2 99.8 E-ATMX-35-raw-cel-1574334864
51.3 99.8 E-ATMX-35-raw-cel-1574334880
50.8 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.4 99.8 E-MEXP-285-raw-cel-440782791
39.8 99.8 E-MEXP-285-raw-cel-440782725
36.8 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
34.9 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.9 99.7 E-MEXP-1138-raw-cel-1432772714
32.0 99.7 E-MEXP-1138-raw-cel-1432772842
31.3 99.7 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
30.4 99.7 E-MEXP-1138-raw-cel-1432772746
30.4 99.7 E-MEXP-1138-raw-cel-1432772874
29.8 99.7 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
29.6 99.7 E-MEXP-1138-raw-cel-1432773098
29.1 99.7 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
28.5 99.7 E-MEXP-1138-raw-cel-1432773130
27.6 99.7 E-MEXP-1138-raw-cel-1432773002
26.9 99.7 E-MEXP-1138-raw-cel-1432772522
26.0 99.7 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
25.8 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.6 99.7 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
25.2 99.6 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
23.3 99.6 E-MEXP-1138-raw-cel-1432772970
23.0 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.6 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.7 99.6 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
21.5 99.6 E-MEXP-1138-raw-cel-1432772586
21.2 99.6 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
21.2 99.6 E-ATMX-35-raw-cel-1574334848
20.9 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.7 99.6 E-MEXP-1138-raw-cel-1432772778
20.3 99.6 E-MEXP-1138-raw-cel-1432772650
19.8 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.7 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.4 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.3 99.6 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
18.5 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.1 99.5 E-MEXP-1138-raw-cel-1432772554
18.1 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.1 99.5 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.6 99.5 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
17.3 99.5 E-MEXP-1138-raw-cel-1432772810
17.0 99.5 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.6 99.5 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.6 99.5 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.5 99.5 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.4 99.5 E-MEXP-1138-raw-cel-1432772682
15.8 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.2 99.4 E-MEXP-509-raw-cel-829148348
15.2 99.4 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
14.9 99.4 E-MEXP-1138-raw-cel-1432772618
14.7 99.4 E-MEXP-1138-raw-cel-1432773162
14.5 99.4 E-MEXP-1138-raw-cel-1432772906
14.2 99.4 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.0 99.4 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.9 99.4 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.7 99.4 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.5 99.4 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.4 99.4 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.4 99.4 E-MEXP-1138-raw-cel-1432773194
12.9 99.3 E-MEXP-1138-raw-cel-1432773354
12.6 99.3 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
12.5 99.3 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.4 99.3 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.0 99.3 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.8 99.3 E-MEXP-1138-raw-cel-1432773226
11.7 99.3 E-MEXP-1138-raw-cel-1432773386
11.2 99.2 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
11.1 99.2 E-MEXP-1138-raw-cel-1432772938
10.6 99.2 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.3 99.2 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.4 99.1 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
9.3 99.1 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
9.3 99.1 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
9.1 99.1 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.7 99.0 E-MEXP-1138-raw-cel-1432773290

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
931.6	100.0	GSM133775	Lindsey_1-27_torpedo-meristem_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
411.7	100.0	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
115.3	99.9	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
57.2	99.8	E-ATMX-35-raw-cel-1574334864
51.3	99.8	E-ATMX-35-raw-cel-1574334880
50.8	99.8	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.4	99.8	E-MEXP-285-raw-cel-440782791
39.8	99.8	E-MEXP-285-raw-cel-440782725
36.8	99.7	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
34.9	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.9	99.7	E-MEXP-1138-raw-cel-1432772714
32.0	99.7	E-MEXP-1138-raw-cel-1432772842
31.3	99.7	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
30.4	99.7	E-MEXP-1138-raw-cel-1432772746
30.4	99.7	E-MEXP-1138-raw-cel-1432772874
29.8	99.7	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
29.6	99.7	E-MEXP-1138-raw-cel-1432773098
29.1	99.7	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
28.5	99.7	E-MEXP-1138-raw-cel-1432773130
27.6	99.7	E-MEXP-1138-raw-cel-1432773002
26.9	99.7	E-MEXP-1138-raw-cel-1432772522
26.0	99.7	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
25.8	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.6	99.7	GSM154505	Arabidopsis hydrated pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
25.2	99.6	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
23.3	99.6	E-MEXP-1138-raw-cel-1432772970
23.0	99.6	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.6	99.6	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.7	99.6	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
21.5	99.6	E-MEXP-1138-raw-cel-1432772586
21.2	99.6	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
21.2	99.6	E-ATMX-35-raw-cel-1574334848
20.9	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
20.7	99.6	E-MEXP-1138-raw-cel-1432772778
20.3	99.6	E-MEXP-1138-raw-cel-1432772650
19.8	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.7	99.6	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.4	99.6	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.3	99.6	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
18.5	99.5	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.1	99.5	E-MEXP-1138-raw-cel-1432772554
18.1	99.5	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.1	99.5	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.6	99.5	GSM133964	Fukuda_1-9_8A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
17.3	99.5	E-MEXP-1138-raw-cel-1432772810
17.0	99.5	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.6	99.5	GSM133965	Fukuda_1-10_8B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.6	99.5	GSM133966	Fukuda_1-11_10A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.5	99.5	GSM133963	Fukuda_1-8_6B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.4	99.5	E-MEXP-1138-raw-cel-1432772682
15.8	99.5	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.2	99.4	E-MEXP-509-raw-cel-829148348
15.2	99.4	GSM133961	Fukuda_1-6_4B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
14.9	99.4	E-MEXP-1138-raw-cel-1432772618
14.7	99.4	E-MEXP-1138-raw-cel-1432773162
14.5	99.4	E-MEXP-1138-raw-cel-1432772906
14.2	99.4	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.0	99.4	GSM133967	Fukuda_1-12_10B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.9	99.4	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.7	99.4	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.5	99.4	GSM133962	Fukuda_1-7_6A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.4	99.4	GSM133960	Fukuda_1-5_4A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.4	99.4	E-MEXP-1138-raw-cel-1432773194
12.9	99.3	E-MEXP-1138-raw-cel-1432773354
12.6	99.3	GSM154503	Arabidopsis desiccated mature pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
12.5	99.3	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
12.4	99.3	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
12.0	99.3	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.8	99.3	E-MEXP-1138-raw-cel-1432773226
11.7	99.3	E-MEXP-1138-raw-cel-1432773386
11.2	99.2	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
11.1	99.2	E-MEXP-1138-raw-cel-1432772938
10.6	99.2	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.3	99.2	GSM133957	Fukuda_1-2_0B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.4	99.1	GSM270853	Arabidopsis cell culture, 4 h_control_rep2	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
9.3	99.1	GSM239252	Columbia glabrous (C24) wild type stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
9.3	99.1	GSM270870	Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
9.1	99.1	GSM133959	Fukuda_1-4_2B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.7	99.0	E-MEXP-1138-raw-cel-1432773290

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.111 1 GO:0006829 The directed movement of zinc (Zn) ions into, out of, within or between cells.
0.105 1 GO:0006817 The directed movement of phosphate into, out of, within or between cells.
0.059 1 GO:0009813 The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.

SF	Genes	GO ID	Process Name
0.111	1	GO:0006829	The directed movement of zinc (Zn) ions into, out of, within or between cells.
0.105	1	GO:0006817	The directed movement of phosphate into, out of, within or between cells.
0.059	1	GO:0009813	The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.024 1 00360 Phenylalanine metabolism
0.023 1 00680 Methane metabolism
0.019 1 00940 Phenylpropanoid biosynthesis

SF	Genes	KEGG ID	Pathway name
0.024	1	00360	Phenylalanine metabolism
0.023	1	00680	Methane metabolism
0.019	1	00940	Phenylpropanoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g32270
Gene name	ZIP3
Module size	5 genes
NF	0.23
%ile	23.2

Co-expression analysis

Gene ID At2g32270 Gene name ZIP3 Module size 5 genes NF 0.23 %ile 23.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.024100360Phenylalanine metabolism0.023100680Methane metabolism0.019100940Phenylpropanoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g32270

Gene name ZIP3

Module size 5 genes

NF 0.23

%ile 23.2

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.024 1 00360 Phenylalanine metabolism
0.023 1 00680 Methane metabolism
0.019 1 00940 Phenylpropanoid biosynthesis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays