Co-expression analysis

Gene ID At2g31090
Gene name unknown protein
Module size 86 genes
NF 0.24
%ile 25.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g31090817665unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4152.40.86At1g70330843369ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1)encodes an adenosine transporter that catalyze a proton-dependent adenosine transport.O.I.H.G.S.X.
0.4050.80.86At3g07570819948membrane protein, putativeF:dopamine beta-monooxygenase activity;P:histidine catabolic process;C:membrane;PMFOBO.I.H.G.S.X.
0.3948.40.84At1g56700842126pyrrolidone-carboxylate peptidase family proteinF:unknown;P:proteolysis;C:cellular_component unknown;BMAOPFO.I.H.G.S.X.
0.3846.70.85At3g56310824798alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putativeF:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process, metabolic process, lactose catabolic process;C:vacuole;MBFOPO.I.H.G.S.X.
0.3643.60.85At4g10840826680kinesin light chain-relatedF:binding;P:unknown;C:plasma membrane;MBOFAPVO.I.H.G.S.X.
0.3541.60.83At5g19930832115integral membrane family proteinF:unknown;P:unknown;C:endomembrane system;OBMAFPO.I.H.G.S.X.
0.3541.60.84At2g05260815074lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.80.83At3g20510821597unknown proteinF:unknown;P:biological_process unknown;C:nucleus, cytoplasm;MPBFOO.I.H.G.S.X.
0.3338.10.86At3g11800820353unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.H.G.S.X.
0.3338.10.84At3g57790824949glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:plasma membrane;PBFOMAVO.I.H.G.S.X.
0.3338.10.86At1g09920837524TRAF-type zinc finger-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.3338.10.85At3g51040824268RTH (RTE1-HOMOLOG)Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.O.I.H.G.S.X.
0.3235.70.85At4g28770828998-F:molecular_function unknown;P:unknown;C:plasma membrane, vacuole, membrane;POO.I.H.G.S.X.
0.3235.70.83At1g30130839892unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBPFO.I.H.G.S.X.
0.3133.80.84At4g36750829828quinone reductase family proteinF:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMVO.I.H.G.S.X.
0.3133.80.84At4g15470827218-F:unknown;P:unknown;C:unknown;BOMPFVO.I.H.G.S.X.
0.3133.80.84At3g13520820554AGP12 (ARABINOGALACTAN PROTEIN 12)Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids, seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling.O.I.H.G.S.X.
0.3032.10.83At5g64370836558BETA-UP (beta-ureidopropionase)PYD3 encodes a beta-ureidopropionase which, when expressed in E. coli, has been shown to convert beta-ureidopropionate into beta-alanine.O.I.H.G.S.X.
0.3032.10.86At1g69960843333PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)type 2A serine/threonine protein phosphatase (PP2A) mRNA,O.I.H.G.S.X.
0.3032.10.84At5g25940832663early nodulin-relatedF:molecular_function unknown;P:unknown;C:mitochondrion;PO.I.H.G.S.X.
0.2930.30.82At1g28280839722VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMFOBO.I.H.G.S.X.
0.2930.30.83At4g10140826605unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;PBOO.I.H.G.S.X.
0.2930.30.82At4g12040826812zinc finger (AN1-like) family proteinF:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVAFO.I.H.G.S.X.
0.2930.30.85At1g28200839714FIP1 (FH INTERACTING PROTEIN 1)VirF-interacting protein FIP1O.I.H.G.S.X.
0.2930.30.84At5g47200834766ATRAB1AF:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.H.G.S.X.
0.2930.30.84At1g54320841873LEM3 (ligand-effect modulator 3) family protein / CDC50 family proteinF:unknown;P:biological_process unknown;C:chloroplast, membrane;MOFPO.I.H.G.S.X.
0.2830.30.84At4g17530827468ATRAB1CF:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole, membrane;MOFPBVAO.I.H.G.S.X.
0.2830.30.83At1g68000843128ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1)phosphatidylinositol synthase 1O.I.H.G.S.X.
0.2830.30.84At2g04900815037unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;BOMPFO.I.H.G.S.X.
0.2830.30.84At1g04960839346-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.H.G.S.X.
0.2726.20.83At4g19640827706ARA7Encodes Ara7.O.I.H.G.S.X.
0.2726.20.84At1g01230839331ORMDL family proteinF:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPOO.I.H.G.S.X.
0.2726.20.83At3g01400821320armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.2726.20.83At4g33940829539zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:unknown;MOPFO.I.H.G.S.X.
0.2726.20.82At5g45130834549RHA1 (RAB HOMOLOG 1)small GTP binding proteinO.I.H.G.S.X.
0.2726.20.84At3g02460821261plant adhesion molecule, putativeF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPO.I.H.G.S.X.
0.2726.20.86At1g17080838278unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2624.40.84At4g32140829346-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;OBMFPAO.I.H.G.S.X.
0.2624.40.85At3g11530820326vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;FMPOO.I.H.G.S.X.
0.2522.60.83At2g15570816050thioredoxin M-type 3, chloroplast (TRX-M3)chloroplast protein similar to prokaryotic thioredoxin.O.I.H.G.S.X.
0.2522.60.86At5g64500836571membrane protein-relatedF:molecular_function unknown;P:biological_process unknown;C:membrane;BOFMAPO.I.H.G.S.X.
0.2522.60.84At1g71190843459SAG18 (SENESCENCE ASSOCIATED GENE 18)Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.O.I.H.G.S.X.
0.2522.60.84At3g02580820679STE1 (STEROL 1)Brassinosteroid biosynthetic enzyme, catalyzes delta7 sterol C-5 desaturation step. Mutant has dwarf phenotype.O.I.H.G.S.X.
0.2420.70.83At1g63460842652glutathione peroxidase, putativeF:glutathione peroxidase activity;P:response to oxidative stress;C:cellular_component unknown;OBMPFVO.I.H.G.S.X.
0.2319.30.84At1g32410840134vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;MFPOO.I.H.G.S.X.
0.2319.30.82At3g02740821256aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane, anchored to membrane;PMFOO.I.H.G.S.X.
0.2319.30.86At5g20090832131unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, membrane;MFPOO.I.H.G.S.X.
0.2319.30.84At5g41560834158-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO.I.H.G.S.X.
0.2319.30.83At2g39550818540PGGT-Iencodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.O.I.H.G.S.X.
0.2319.30.82At3g47810823935MAG1 (MAIGO 1)Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.O.I.H.G.S.X.
0.2217.50.83At1g20110838600zinc finger (FYVE type) family proteinF:phosphoinositide binding;P:signal transduction;C:unknown;MFOPBVAO.I.H.G.S.X.
0.2217.50.83At3g023608211636-phosphogluconate dehydrogenase family proteinF:in 6 functions;P:response to salt stress;C:peroxisome;BOMPFAVO.I.H.G.S.X.
0.2217.50.82At3g14410820663transporter-relatedF:organic anion transmembrane transporter activity;P:unknown;C:cytosolic ribosome;PMFOBAO.I.H.G.S.X.
0.2217.50.83At3g55960824762NLI interacting factor (NIF) family proteinF:phosphatase activity;P:biological_process unknown;C:unknown;MOFPO.I.H.G.S.X.
0.2115.80.83At5g19050832024unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;FOBMPVO.I.H.G.S.X.
0.2115.80.82At5g56170835716-F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.2115.80.83At3g21610821715-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.H.G.S.X.
0.2014.40.83At3g48760824037zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPO.I.H.G.S.X.
0.2014.40.83At2g27490817294ATCOAEAT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA.O.I.H.G.S.X.
0.2014.40.83At1g21380838737VHS domain-containing protein / GAT domain-containing proteinF:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOBO.I.H.G.S.X.
0.1912.70.84At1g30890839973integral membrane HRF1 family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPOO.I.H.G.S.X.
0.1912.70.83At1g36980840608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.1912.70.84At3g22950821868ATARFC1 (ADP-ribosylation factor C1)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins.O.I.H.G.S.X.
0.1912.70.83At5g20650832188COPT5encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeastO.I.H.G.S.X.
0.1912.70.82At1g16240838193SYP51 (SYNTAXIN OF PLANTS 51)Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.O.I.H.G.S.X.
0.1912.70.82At4g27040828812VPS22F:molecular_function unknown;P:vesicle-mediated transport;C:ESCRT II complex;MFOPO.I.H.G.S.X.
0.1811.40.83At5g02040831904PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPFO.I.H.G.S.X.
0.1811.40.83At5g48810834939CB5-D (CYTOCHROME B5 ISOFORM D)Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.O.I.H.G.S.X.
0.1710.20.83At2g29900817540presenilin family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPAO.I.H.G.S.X.
0.1710.20.83At5g60620836183phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:triglyceride biosynthetic process, diacylglycerol biosynthetic process, metabolic process;C:plasma membrane, membrane;MOBPFO.I.H.G.S.X.
0.1710.20.83At2g36300818202integral membrane Yip1 family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOPO.I.H.G.S.X.
0.1710.20.83At5g08290830725YLS8Encodes Dim1 homolog.O.I.H.G.S.X.
0.1710.20.83At3g59950825165autophagy 4b (APG4b)F:peptidase activity;P:autophagy;C:chloroplast;MOFPO.I.H.G.S.X.
0.1710.20.82At5g56020835700-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.168.80.83At3g18430821372calcium-binding EF hand family proteinF:calcium ion binding;P:N-terminal protein myristoylation;C:vacuole;MPOFBO.I.H.G.S.X.
0.157.80.83At2g03680814896SPR1 (SPIRAL1)The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.O.I.H.G.S.X.
0.157.80.83At4g38920830047ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MOFBPAO.I.H.G.S.X.
0.146.80.84At1g74340843775dolichol phosphate-mannose biosynthesis regulatory protein-relatedF:molecular_function unknown;P:macromolecule biosynthetic process;C:integral to endoplasmic reticulum membrane, endomembrane system;MFOPO.I.H.G.S.X.
0.146.80.84At2g36060818179ubiquitin-conjugating enzyme family proteinMMZ3/UEV1C encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1C can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ3/UEV1C transcripts are found at moderate levels in most plant organs, but cannot be detected in the pollen or 2 days after germination. Transcript levels do not appear to be stress-inducible.O.I.H.G.S.X.
0.135.80.84At1g68070843135zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.135.80.82At1g58100842177TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.124.90.83At3g48140823969senescence-associated protein, putativeF:molecular_function unknown;P:leaf senescence;C:endomembrane system;PO.I.H.G.S.X.
0.124.90.82At5g36290833627unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFAO.I.H.G.S.X.
0.124.90.83At3g18990821432VRN1 (REDUCED VERNALIZATION RESPONSE 1)Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3O.I.H.G.S.X.
0.092.80.82At2g39750818560dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:unknown;PMOBFVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.999.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
50.999.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
48.799.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
48.499.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.999.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.599.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.599.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.899.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.599.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.099.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.099.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.099.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.099.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.799.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.599.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.499.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.399.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.899.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
33.299.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.499.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.499.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.399.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.599.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.999.7GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
27.699.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
23.799.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.199.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.699.5GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
16.899.5GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
15.399.4GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.699.4GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.599.4GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
12.299.3GSM311278Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
12.199.3GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
11.799.3GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination StudyLink to GEO
11.399.3GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination StudyLink to GEO
10.899.2GSM311277Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
8.799.0GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0554GO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.Link to AmiGO
0.0394GO:0015031The directed movement of proteins into, out of, within or between cells.Link to AmiGO
0.0293GO:0016192The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.040200770Pantothenate and CoA biosynthesisLink to KEGG PATHWAY
0.029200480Glutathione metabolismLink to KEGG PATHWAY
0.022100603Glycosphingolipid biosynthesis - globo seriesLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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