Co-expression analysis

Gene ID At2g29690
Gene name ASA2 (ANTHRANILATE SYNTHASE 2)
Module size 5 genes
NF 0.08
%ile 4.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.6176.71.00At2g29690817519ASA2 (ANTHRANILATE SYNTHASE 2)Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis.O.I.H.G.S.X.
0.2726.20.85At3g07440819932unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.146.80.86At5g48840834942PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC)Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate.O.I.H.G.S.X.
0.051.10.85At2g13440815830glucose-inhibited division family A proteinF:FAD binding;P:tRNA processing, tRNA wobble uridine modification;C:chloroplast;OBMFPAO.I.H.G.S.X.
0.010.20.85At1g09830837515phosphoribosylamine--glycine ligase (PUR2)glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamideO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
82.099.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
77.999.9GSM39200Col_C2GSE2169rre1 and rre2 mutantsLink to GEO
73.399.9GSM152145siz1-3 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
65.699.8GSM152143siz1-3 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
63.899.8GSM176878AWP_AL_Txed_2GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
51.499.8GSM39214RRE2_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
46.799.8GSM152141siz1-3 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
33.599.7E-MEXP-711-raw-cel-1563002768
33.299.7GSM39208RRE2_C2GSE2169rre1 and rre2 mutantsLink to GEO
31.299.7E-MEXP-711-raw-cel-1563002803
25.599.7GSM131306AtGen_6-2622_Osmoticstress-Roots-24.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
23.999.6GSM131305AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
22.699.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.399.6GSM39201Col_C3GSE2169rre1 and rre2 mutantsLink to GEO
20.099.6GSM184934Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
19.599.6GSM131381AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
18.299.5GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
17.299.5GSM184932Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
16.999.5GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
16.899.5E-ATMX-1-raw-cel-1112746267
15.699.5E-ATMX-1-raw-cel-1112746209
12.399.3GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
12.099.3E-ATMX-1-raw-cel-1112746154
12.099.3GSM176880AWP_Control_2GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.999.3GSM131382AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
11.799.3GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.699.3GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
11.499.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.399.3GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
11.299.2GSM39192RRE1_C2GSE2169rre1 and rre2 mutantsLink to GEO
11.299.2GSM184935Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 1GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
11.099.2GSM39210RRE2_C4GSE2169rre1 and rre2 mutantsLink to GEO
10.699.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.699.2GSM131326AtGen_6-3522_Saltstress-Roots-12.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
10.499.2GSM39203Col_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
10.499.2GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
10.399.2GSM39202Col_C4GSE2169rre1 and rre2 mutantsLink to GEO
10.099.2GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.799.1GSM131297AtGen_6-2421_Osmoticstress-Roots-6.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
9.699.1GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.599.1GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.499.1GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.499.1GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.499.1GSM39209RRE2_C3GSE2169rre1 and rre2 mutantsLink to GEO
9.399.1GSM131296AtGen_6-2412_Osmoticstress-Shoots-6.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
9.099.1GSM184936Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
8.999.0GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
8.899.0GSM39199Col_C1GSE2169rre1 and rre2 mutantsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.3331GO:0002098The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.Link to AmiGO
0.2221GO:0009113The chemical reactions and pathways resulting in the formation of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.Link to AmiGO
0.2221GO:0015940The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.100100770Pantothenate and CoA biosynthesisLink to KEGG PATHWAY
0.091100410beta-Alanine metabolismLink to KEGG PATHWAY
0.044100400Phenylalanine, tyrosine and tryptophan biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage