CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g29100

Gene name ATGLR2.9

Module size 37 genes

NF 0.60

%ile 81.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.72 84.8 1.00 At2g29100 817458 ATGLR2.9 member of Putative ligand-gated ion channel subunit family O.I. H.G. S.X.
0.84 91.9 0.76 At4g30540 829177 glutamine amidotransferase class-I domain-containing protein F:catalytic activity;P:unknown;C:cellular_component unknown;OBAFPVM O.I. H.G. S.X.
0.78 88.6 0.78 At3g16930 820948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.77 88.0 0.78 At4g18500 827582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.77 88.0 0.76 At1g50190 3767425 - F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown O.I. H.G. S.X.
0.76 87.4 0.75 At5g52000 835275 IMPA-8 (IMPORTIN ALPHA ISOFORM 8) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. O.I. H.G. S.X.
0.75 86.9 0.78 At1g18220 838402 ATPUP9 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. H.G. S.X.
0.74 86.1 0.76 At2g01800 814711 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVA O.I. H.G. S.X.
0.74 86.1 0.78 At5g17180 831582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.70 83.5 0.75 At5g09340 830793 ubiquitin, putative F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFV O.I. H.G. S.X.
0.70 83.5 0.80 At4g18850 827619 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.67 81.6 0.77 At1g28135 839707 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.67 81.6 0.77 At2g14810 815969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.67 81.6 0.76 At4g10410 826633 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.65 79.6 0.75 At1g31260 840014 ZIP10 (ZINC TRANSPORTER 10 PRECURSOR) member of Fe(II) transporter isolog family O.I. H.G. S.X.
0.64 78.9 0.77 At1g11970 837749 - F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPFOV O.I. H.G. S.X.
0.64 78.9 0.82 At5g28170 832893 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.63 78.1 0.79 At2g02670 3768646 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.62 77.3 0.78 At2g06020 815156 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. H.G. S.X.
0.62 77.3 0.76 At1g51990 841628 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM O.I. H.G. S.X.
0.61 76.7 0.76 At2g36040 818177 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.58 73.8 0.74 At5g35870 833573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.55 70.6 0.73 At3g24640 822060 lyase F:lyase activity;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.55 70.6 0.74 At3g58300 824999 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.54 69.5 0.75 At1g65940 3767646 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.53 68.6 0.76 At5g57730 835880 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.53 68.6 0.77 At4g22510 828346 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.52 67.4 0.74 At3g16600 820911 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 6 functions;P:unknown;C:unknown;MFBOPVA O.I. H.G. S.X.
0.52 67.4 0.74 At3g32050 822960 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.51 66.3 0.74 At1g57570 842133 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.49 63.5 0.74 At5g17200 831584 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA O.I. H.G. S.X.
0.49 63.5 0.77 At2g23860 3767880 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.49 63.5 0.77 At1g67635 843087 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.48 62.5 0.75 At5g04650 830342 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.46 59.8 0.73 At5g36090 833605 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.45 58.3 0.79 At3g12840 820466 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. H.G. S.X.
0.44 57.2 0.75 At1g50160 841438 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.72	84.8	1.00	At2g29100	817458	ATGLR2.9	member of Putative ligand-gated ion channel subunit family	O.I.	H.G.	S.X.
0.84	91.9	0.76	At4g30540	829177	glutamine amidotransferase class-I domain-containing protein	F:catalytic activity;P:unknown;C:cellular_component unknown;OBAFPVM	O.I.	H.G.	S.X.
0.78	88.6	0.78	At3g16930	820948	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.77	88.0	0.78	At4g18500	827582	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.77	88.0	0.76	At1g50190	3767425	-	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown	O.I.	H.G.	S.X.
0.76	87.4	0.75	At5g52000	835275	IMPA-8 (IMPORTIN ALPHA ISOFORM 8)	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	H.G.	S.X.
0.75	86.9	0.78	At1g18220	838402	ATPUP9	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	H.G.	S.X.
0.74	86.1	0.76	At2g01800	814711	COP1-interacting protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVA	O.I.	H.G.	S.X.
0.74	86.1	0.78	At5g17180	831582	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.70	83.5	0.75	At5g09340	830793	ubiquitin, putative	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFV	O.I.	H.G.	S.X.
0.70	83.5	0.80	At4g18850	827619	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.67	81.6	0.77	At1g28135	839707	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.67	81.6	0.77	At2g14810	815969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.67	81.6	0.76	At4g10410	826633	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.65	79.6	0.75	At1g31260	840014	ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)	member of Fe(II) transporter isolog family	O.I.	H.G.	S.X.
0.64	78.9	0.77	At1g11970	837749	-	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPFOV	O.I.	H.G.	S.X.
0.64	78.9	0.82	At5g28170	832893	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.63	78.1	0.79	At2g02670	3768646	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.62	77.3	0.78	At2g06020	815156	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	H.G.	S.X.
0.62	77.3	0.76	At1g51990	841628	O-methyltransferase family 2 protein	F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM	O.I.	H.G.	S.X.
0.61	76.7	0.76	At2g36040	818177	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.58	73.8	0.74	At5g35870	833573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.55	70.6	0.73	At3g24640	822060	lyase	F:lyase activity;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.55	70.6	0.74	At3g58300	824999	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.54	69.5	0.75	At1g65940	3767646	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.76	At5g57730	835880	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.53	68.6	0.77	At4g22510	828346	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	H.G.	S.X.
0.52	67.4	0.74	At3g16600	820911	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	F:in 6 functions;P:unknown;C:unknown;MFBOPVA	O.I.	H.G.	S.X.
0.52	67.4	0.74	At3g32050	822960	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.51	66.3	0.74	At1g57570	842133	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.49	63.5	0.74	At5g17200	831584	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA	O.I.	H.G.	S.X.
0.49	63.5	0.77	At2g23860	3767880	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	0.77	At1g67635	843087	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.48	62.5	0.75	At5g04650	830342	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.46	59.8	0.73	At5g36090	833605	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.45	58.3	0.79	At3g12840	820466	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	H.G.	S.X.
0.44	57.2	0.75	At1g50160	841438	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.84	91.9	0.82	At4g20290	827776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM	O.I.	H.G.	S.X.
0.77	88.0	0.74	At5g25140	832585	CYP71B13	putative cytochrome P450	O.I.	H.G.	S.X.
0.76	87.4	0.70	At5g17130	831577	cysteine-type peptidase	F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.71	84.2	0.67	At5g53810	835462	O-methyltransferase, putative	F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	H.G.	S.X.
0.69	82.9	0.80	At3g56390	824806	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.64	78.9	0.74	At5g17720	831639	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFVA	O.I.	H.G.	S.X.
0.60	75.7	0.68	At3g26120	822211	TEL1 (TERMINAL EAR1-LIKE 1)	Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins.	O.I.	H.G.	S.X.
0.59	74.7	0.68	At2g24620	816998	S-locus glycoprotein family protein	F:unknown;P:recognition of pollen;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.58	73.8	0.70	At1g50080	841431	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.58	73.8	0.69	At4g20250	827772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.56	73.0	0.69	At2g03130	814842	ribosomal protein L12 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF	O.I.	H.G.	S.X.
0.55	70.6	0.64	At3g23460	821927	cyclopropane fatty acid synthase-related	F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:chloroplast;OBPFM	O.I.	H.G.	S.X.
0.55	70.6	0.62	At1g31670	840054	copper amine oxidase, putative	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	H.G.	S.X.
0.55	70.6	0.72	At2g15600	816053	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.55	70.6	0.70	At3g53550	824523	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.54	69.5	0.71	At4g22700	828366	LBD32 (LOB DOMAIN-CONTAINING PROTEIN 32)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.53	68.6	0.63	At5g43000	834315	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP	O.I.	H.G.	S.X.
0.52	67.4	0.65	At2g23920	816924	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	H.G.	S.X.
0.52	67.4	0.66	At5g23640	832429	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.51	66.3	0.60	At4g21050	827852	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.50	65.3	0.70	At5g41380	834140	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;POMF	O.I.	H.G.	S.X.
0.50	65.3	0.67	At1g65550	842866	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	H.G.	S.X.
0.50	65.3	0.69	At5g58180	835930	ATYKT62	member of YKT6 Gene Family	O.I.	H.G.	S.X.
0.50	65.3	0.69	At2g18070	816319	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.49	63.5	0.64	At5g46300	834673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMAP	O.I.	H.G.	S.X.
0.49	63.5	0.57	At5g36720	833637	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.49	63.5	0.65	At2g23440	816876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.48	62.5	0.68	At1g53980	841836	polyubiquitin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFV	O.I.	H.G.	S.X.
0.46	59.8	0.65	At3g29690	822647	transferase-related	F:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	H.G.	S.X.
0.46	59.8	0.68	At3g02390	820514	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.46	59.8	0.71	At3g53770	824544	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:response to stress;C:unknown;P	O.I.	H.G.	S.X.
0.46	59.8	0.68	At2g05400	815088	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.45	58.3	0.70	At1g10420		-	-	O.I.	H.G.	S.X.
0.45	58.3	0.66	At3g43420	823422	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.45	58.3	0.72	At2g11390	3767808	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.44	57.2	0.58	At5g51860	835261	MADS-box protein (AGL72)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	H.G.	S.X.
0.44	57.2	0.69	At1g59535	842244	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.44	57.2	0.71	At3g46390	823789	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.44	57.2	0.71	At5g37900	833769	seven in absentia (SINA) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus, plasma membrane;MPO	O.I.	H.G.	S.X.
0.44	57.2	0.65	At1g50930	841515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFVB	O.I.	H.G.	S.X.
0.44	57.2	0.70	At4g31280	829255	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.44	57.2	0.68	At1g69540	843289	AGL94 (AGAMOUS-LIKE 94)	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators.	O.I.	H.G.	S.X.
0.42	53.9	0.69	At2g01780	814709	S-locus glycoprotein, putative	F:sugar binding;P:recognition of pollen;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.42	53.9	0.71	At2g06390	815197	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.42	53.9	0.66	At1g67270	843047	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	H.G.	S.X.
0.42	53.9	0.70	At2g05870	815139	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.42	53.9	0.67	At2g05500	815099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.41	52.4	0.70	At5g35510	833515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.41	52.4	0.68	At2g25990	817140	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	H.G.	S.X.
0.41	52.4	0.64	At2g20070	816526	-	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	H.G.	S.X.

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
101.1 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
69.0 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
64.1 99.8 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
56.4 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
53.2 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.4 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.5 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.4 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.3 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.4 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.1 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.0 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.3 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.1 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.9 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.7 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.2 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.9 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.2 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.1 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.8 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.8 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.7 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.7 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.8 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.5 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.2 99.6 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
21.9 99.6 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
20.6 99.6 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
20.0 99.6 E-ATMX-35-raw-cel-1574334832
16.4 99.5 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.3 99.4 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.2 99.4 E-ATMX-35-raw-cel-1574334800
14.6 99.4 E-ATMX-35-raw-cel-1574334816
13.3 99.4 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
12.6 99.3 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.8 99.2 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.9 99.1 GSM133776 Lindsey_1-1_globular-apical_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
101.1	99.9	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
69.0	99.9	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
64.1	99.8	GSM133759	Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
56.4	99.8	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
53.2	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.4	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.5	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.4	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.3	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
39.4	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.1	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.0	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.3	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.1	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.9	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.7	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.2	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.9	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.2	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.1	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.8	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.8	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.7	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.7	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.8	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.5	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.2	99.6	GSM131606	ATGE_42_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
21.9	99.6	GSM131608	ATGE_42_D	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
20.6	99.6	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
20.0	99.6	E-ATMX-35-raw-cel-1574334832
16.4	99.5	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.3	99.4	GSM131607	ATGE_42_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
15.2	99.4	E-ATMX-35-raw-cel-1574334800
14.6	99.4	E-ATMX-35-raw-cel-1574334816
13.3	99.4	GSM311296	Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
12.6	99.3	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.8	99.2	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.9	99.1	GSM133776	Lindsey_1-1_globular-apical_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.034 1 GO:0006863 The directed movement of purines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells.
0.034 1 GO:0006874 Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.
0.029 2 GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).

SF	Genes	GO ID	Process Name
0.034	1	GO:0006863	The directed movement of purines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells.
0.034	1	GO:0006874	Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.
0.029	2	GO:0006464	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.029 1 00040 Pentose and glucuronate interconversions
0.017 1 00500 Starch and sucrose metabolism
0.002 1 01100 Metabolic pathways

SF	Genes	KEGG ID	Pathway name
0.029	1	00040	Pentose and glucuronate interconversions
0.017	1	00500	Starch and sucrose metabolism
0.002	1	01100	Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g29100
Gene name	ATGLR2.9
Module size	37 genes
NF	0.60
%ile	81.6

Co-expression analysis

Gene ID At2g29100 Gene name ATGLR2.9 Module size 37 genes NF 0.60 %ile 81.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.029100040Pentose and glucuronate interconversions0.017100500Starch and sucrose metabolism0.002101100Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g29100

Gene name ATGLR2.9

Module size 37 genes

NF 0.60

%ile 81.6

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.029 1 00040 Pentose and glucuronate interconversions
0.017 1 00500 Starch and sucrose metabolism
0.002 1 01100 Metabolic pathways

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays