CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g28710

Gene name zinc finger (C2H2 type) family protein

Module size 28 genes

NF 0.27

%ile 31.9

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At2g28710 817420 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO O.I. H.G. S.X.
0.44 57.2 0.75 At3g55470 824713 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.39 48.4 0.72 At4g34180 829566 cyclase family protein F:molecular_function unknown;P:response to salt stress;C:cell wall;BOAPM O.I. H.G. S.X.
0.34 39.8 0.71 At1g21010 838695 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. H.G. S.X.
0.33 38.1 0.71 At4g13510 826983 AMT1 Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake. O.I. H.G. S.X.
0.29 30.3 0.71 At3g51440 824307 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;BPMOFA O.I. H.G. S.X.
0.28 30.3 0.72 At1g70530 843390 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.28 30.3 0.71 At4g12070 826815 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;P O.I. H.G. S.X.
0.28 30.3 0.71 At3g55740 824740 PROT2 (PROLINE TRANSPORTER 2) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed most highly in the roots. O.I. H.G. S.X.
0.27 26.2 0.71 At3g17410 821005 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.26 24.4 0.71 At3g57280 824895 unknown protein F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;PMO O.I. H.G. S.X.
0.26 24.4 0.73 At5g04170 830295 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.
0.26 24.4 0.71 At3g60690 825240 auxin-responsive family protein F:unknown;P:response to auxin stimulus;C:unknown;PO O.I. H.G. S.X.
0.26 24.4 0.72 At3g13430 820543 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. H.G. S.X.
0.25 22.6 0.71 At3g28450 822474 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast, plasma membrane, membrane;PMOBFVA O.I. H.G. S.X.
0.24 20.7 0.71 At1g11180 837659 secretory carrier membrane protein (SCAMP) family protein F:transmembrane transporter activity;P:protein transport;C:integral to membrane;MPOF O.I. H.G. S.X.
0.24 20.7 0.71 At3g22260 821796 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:plasma membrane;MPOFV O.I. H.G. S.X.
0.23 19.3 0.73 At3g21630 821717 CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1) LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. O.I. H.G. S.X.
0.22 17.5 0.71 At2g33110 817873 ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723) member of VAMP72 Gene Family O.I. H.G. S.X.
0.22 17.5 0.72 At5g47120 834758 ATBI1 (BAX INHIBITOR 1) Encodes BI-1, a homolog of mammalian Bax inhibitor 1. Functions as an attenuator of biotic and abiotic types of cell death. Bax-induced cell death can be downregulated by ectopically expressing AtBI in planta. O.I. H.G. S.X.
0.21 15.8 0.71 At3g12040 820378 DNA-3-methyladenine glycosylase (MAG) F:DNA binding, alkylbase DNA N-glycosylase activity, catalytic activity;P:base-excision repair;C:cellular_component unknown;BOMAPF O.I. H.G. S.X.
0.21 15.8 0.72 At5g53110 835391 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.19 12.7 0.73 At4g16840 827391 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.18 11.4 0.71 At2g17760 816285 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PFMO O.I. H.G. S.X.
0.18 11.4 0.73 At4g04800 825817 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:nucleus;OBMPFAV O.I. H.G. S.X.
0.17 10.2 0.71 At3g57090 824876 BIGYIN Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division. O.I. H.G. S.X.
0.16 8.8 0.72 At5g37480 833726 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.15 7.8 0.71 At1g65820 842893 microsomal glutathione s-transferase, putative F:glutathione transferase activity;P:biological_process unknown;C:endoplasmic reticulum, vacuole, membrane;MFPOB O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At2g28710	817420	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO	O.I.	H.G.	S.X.
0.44	57.2	0.75	At3g55470	824713	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	H.G.	S.X.
0.39	48.4	0.72	At4g34180	829566	cyclase family protein	F:molecular_function unknown;P:response to salt stress;C:cell wall;BOAPM	O.I.	H.G.	S.X.
0.34	39.8	0.71	At1g21010	838695	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.33	38.1	0.71	At4g13510	826983	AMT1	Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.	O.I.	H.G.	S.X.
0.29	30.3	0.71	At3g51440	824307	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;BPMOFA	O.I.	H.G.	S.X.
0.28	30.3	0.72	At1g70530	843390	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.28	30.3	0.71	At4g12070	826815	unknown protein	F:unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	H.G.	S.X.
0.28	30.3	0.71	At3g55740	824740	PROT2 (PROLINE TRANSPORTER 2)	Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed most highly in the roots.	O.I.	H.G.	S.X.
0.27	26.2	0.71	At3g17410	821005	serine/threonine protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.26	24.4	0.71	At3g57280	824895	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;PMO	O.I.	H.G.	S.X.
0.26	24.4	0.73	At5g04170	830295	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	H.G.	S.X.
0.26	24.4	0.71	At3g60690	825240	auxin-responsive family protein	F:unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	H.G.	S.X.
0.26	24.4	0.72	At3g13430	820543	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	H.G.	S.X.
0.25	22.6	0.71	At3g28450	822474	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast, plasma membrane, membrane;PMOBFVA	O.I.	H.G.	S.X.
0.24	20.7	0.71	At1g11180	837659	secretory carrier membrane protein (SCAMP) family protein	F:transmembrane transporter activity;P:protein transport;C:integral to membrane;MPOF	O.I.	H.G.	S.X.
0.24	20.7	0.71	At3g22260	821796	OTU-like cysteine protease family protein	F:cysteine-type peptidase activity;P:biological_process unknown;C:plasma membrane;MPOFV	O.I.	H.G.	S.X.
0.23	19.3	0.73	At3g21630	821717	CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1)	LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane.	O.I.	H.G.	S.X.
0.22	17.5	0.71	At2g33110	817873	ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)	member of VAMP72 Gene Family	O.I.	H.G.	S.X.
0.22	17.5	0.72	At5g47120	834758	ATBI1 (BAX INHIBITOR 1)	Encodes BI-1, a homolog of mammalian Bax inhibitor 1. Functions as an attenuator of biotic and abiotic types of cell death. Bax-induced cell death can be downregulated by ectopically expressing AtBI in planta.	O.I.	H.G.	S.X.
0.21	15.8	0.71	At3g12040	820378	DNA-3-methyladenine glycosylase (MAG)	F:DNA binding, alkylbase DNA N-glycosylase activity, catalytic activity;P:base-excision repair;C:cellular_component unknown;BOMAPF	O.I.	H.G.	S.X.
0.21	15.8	0.72	At5g53110	835391	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.19	12.7	0.73	At4g16840	827391	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.18	11.4	0.71	At2g17760	816285	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PFMO	O.I.	H.G.	S.X.
0.18	11.4	0.73	At4g04800	825817	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:nucleus;OBMPFAV	O.I.	H.G.	S.X.
0.17	10.2	0.71	At3g57090	824876	BIGYIN	Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.	O.I.	H.G.	S.X.
0.16	8.8	0.72	At5g37480	833726	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.15	7.8	0.71	At1g65820	842893	microsomal glutathione s-transferase, putative	F:glutathione transferase activity;P:biological_process unknown;C:endoplasmic reticulum, vacuole, membrane;MFPOB	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
86.9 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
80.1 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
80.1 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
72.6 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
57.0 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.5 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.6 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
45.5 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
45.5 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.0 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.3 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.9 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.9 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.0 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.7 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.5 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.5 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.3 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.9 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.8 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.6 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.6 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.4 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.4 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.0 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.0 99.5 E-ATMX-35-raw-cel-1574334816
13.5 99.4 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
13.2 99.4 E-ATMX-35-raw-cel-1574334832
12.8 99.3 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
12.7 99.3 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.4 99.3 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
12.3 99.3 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
12.0 99.3 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.7 99.3 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
11.5 99.3 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
10.8 99.2 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.6 99.2 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.2 99.2 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.1 99.2 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.9 99.1 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
9.5 99.1 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.1 99.1 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
8.9 99.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.7 99.0 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
86.9	99.9	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
80.1	99.9	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
80.1	99.9	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
72.6	99.9	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
57.0	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.0	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.5	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.6	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
45.5	99.8	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
45.5	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.0	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
42.3	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.9	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.9	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.0	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.7	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.5	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.5	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.3	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.9	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.8	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.6	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.6	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.4	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.4	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.0	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.0	99.5	E-ATMX-35-raw-cel-1574334816
13.5	99.4	GSM133117	RIKEN-YAMAUCHI1A	GSE5687	AtGenExpress: Different temperature treatment of seeds
13.2	99.4	E-ATMX-35-raw-cel-1574334832
12.8	99.3	GSM269821	WT leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
12.7	99.3	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.4	99.3	GSM133303	RIKEN-NAKABAYASHI1A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
12.3	99.3	GSM131303	AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
12.0	99.3	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.7	99.3	GSM311292	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
11.5	99.3	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
10.8	99.2	GSM269819	C2 leaf-drought-rep1	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.6	99.2	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.2	99.2	GSM269827	C2 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.1	99.2	GSM269813	WT leaf-drought-rep1	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.9	99.1	GSM147965	lec1-1 Globular Stage Seed 1	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
9.5	99.1	GSM269829	WT leaf-drought-rep3	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.1	99.1	GSM269825	T8 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
8.9	99.0	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.7	99.0	GSM269823	T6 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.069 1 GO:0006983 The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB.
0.069 1 GO:0032491 The series of events in which a stimulus from a molecule of fungal origin is received and converted into a molecular signal.
0.065 1 GO:0015824 The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of, within or between cells.

SF	Genes	GO ID	Process Name
0.069	1	GO:0006983	The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB.
0.069	1	GO:0032491	The series of events in which a stimulus from a molecule of fungal origin is received and converted into a molecular signal.
0.065	1	GO:0015824	The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of, within or between cells.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.042 1 00980 Metabolism of xenobiotics by cytochrome P450
0.030 1 03410 Base excision repair
0.025 1 00480 Glutathione metabolism

SF	Genes	KEGG ID	Pathway name
0.042	1	00980	Metabolism of xenobiotics by cytochrome P450
0.030	1	03410	Base excision repair
0.025	1	00480	Glutathione metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At2g28710
Gene name	zinc finger (C2H2 type) family protein
Module size	28 genes
NF	0.27
%ile	31.9

Co-expression analysis

Gene ID At2g28710 Gene name zinc finger (C2H2 type) family protein Module size 28 genes NF 0.27 %ile 31.9

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.042100980Metabolism of xenobiotics by cytochrome P4500.030103410Base excision repair0.025100480Glutathione metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g28710

Gene name zinc finger (C2H2 type) family protein

Module size 28 genes

NF 0.27

%ile 31.9

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.042 1 00980 Metabolism of xenobiotics by cytochrome P450
0.030 1 03410 Base excision repair
0.025 1 00480 Glutathione metabolism

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays