Co-expression analysis

Gene ID At2g26380
Gene name disease resistance protein-related / LRR protein-related
Module size 5 genes
NF 0.49
%ile 68.6



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5065.31.00At2g26380817178disease resistance protein-related / LRR protein-relatedF:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.H.G.S.X.
0.6781.60.78At1g32970840191subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFMO.I.H.G.S.X.
0.6781.60.68At3g60120825182BGLU27 (BETA GLUCOSIDASE 27)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAO.I.H.G.S.X.
0.4050.80.91At5g52400835316CYP715A1member of CYP715AO.I.H.G.S.X.
0.3338.10.69At2g36650818237-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
182.0100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
142.399.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
139.999.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
112.799.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
103.799.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
103.299.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
100.699.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
94.099.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
91.799.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
91.599.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
88.499.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
84.599.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
80.999.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
80.999.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
78.499.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
77.599.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
77.499.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
73.499.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
73.199.9GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
69.099.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
64.499.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
59.999.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.799.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
41.199.8GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
32.199.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
31.199.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.199.7GSM184921Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
24.999.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.599.6GSM133778Lindsey_1-2_globular-apical_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
20.299.6GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination StudyLink to GEO
20.199.6GSM184902Arabidopsis, root cells, stele, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
19.899.6GSM133988Birnbaum_1-18_wol-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
19.099.5GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination StudyLink to GEO
18.699.5GSM184919Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
17.499.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.299.4GSM184920Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.099.4GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.399.4GSM184935Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 1GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
14.199.4GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.999.4GSM184634Arabidopsis, root cells, 140 mM NaCl, replicate 1GSE7636Expression analysis of the effect of protoplasting and FACS sorting in rootsLink to GEO
13.899.4E-MEXP-509-raw-cel-829148561
13.299.4E-MEXP-509-raw-cel-829148525
12.599.3GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
12.599.3GSM133987Birnbaum_1-17_wol-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
12.399.3GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.199.3E-MEXP-509-raw-cel-829148456
10.299.2GSM184918Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.099.2GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
9.799.1GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.699.1GSM131108Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)Link to GEO
9.699.1GSM184494Endodermis&Pericycle root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.399.1GSM184903Arabidopsis, root cells, stele, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.299.1E-MEXP-509-raw-cel-829148348
9.199.1GSM184936Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
9.199.1GSM131106Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)Link to GEO
8.999.0GSM184933Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 1GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
8.999.0E-MEXP-265-raw-cel-414619106
8.999.0E-MEXP-509-raw-cel-829148420
8.899.0E-MEXP-509-raw-cel-829148129

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0381GO:0043086Any process that stops or reduces the activity of an enzyme.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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