Co-expression analysis

Gene ID At2g25190
Gene name unknown protein
Module size 74 genes
NF 0.33
%ile 44.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g25190817057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFO.I.H.G.S.X.
0.6075.70.89At5g07910830685leucine-rich repeat family proteinF:protein binding;P:N-terminal protein myristoylation;C:plasma membrane;MPBOFAO.I.H.G.S.X.
0.6075.70.89At3g57090824876BIGYINEncodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.O.I.H.G.S.X.
0.5773.80.87At3g63420825517AGG1 (Arabidopsis Ggamma-subunit 1)heterotrimeric G protein gamma-subunit (AGG1) mRNA,O.I.H.G.S.X.
0.5570.60.88At5g53330835414-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.5368.60.88At5g27830832845-F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;MOPO.I.H.G.S.X.
0.5368.60.87At2g40600818655appr-1-p processing enzyme family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMVOAFPO.I.H.G.S.X.
0.5368.60.88At5g45550834591mob1/phocein family proteinF:protein binding;P:biological_process unknown;C:nucleus;MFOPO.I.H.G.S.X.
0.5267.40.88At1g69640843300SBH1 (SPHINGOID BASE HYDROXYLASE 1)Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.O.I.H.G.S.X.
0.4963.50.88At5g08335830731ATSTE14BEncodes an isoprenyl cysteine methylatransferase (ICMT) involved in the post-translational processing of proteins that have a C-terminal CaaX box. This protein appears to have higher catalytic activity and a higher transcript expression level than the other ICMT present in Arabidopsis (At5g23320). Analysis of ICMT RNAi lines suggests that this protein is involved in flower and stem development.O.I.H.G.S.X.
0.4862.50.87At1g63830842686proline-rich family proteinF:unknown;P:unknown;C:plasma membrane, membrane;POMFBO.I.H.G.S.X.
0.4761.20.87At2g33110817873ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)member of VAMP72 Gene FamilyO.I.H.G.S.X.
0.4659.80.87At3g01170820469structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PO.I.H.G.S.X.
0.4558.30.88At3g18820821415ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, nucleus;MOFPBAVO.I.H.G.S.X.
0.4457.20.89At3g55830824749EPC1 (ECTOPICALLY PARTING CELLS)A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant.O.I.H.G.S.X.
0.4457.20.88At3g63080825483ATGPX5 (glutathione peroxidase 5)Encodes glutathione peroxidase.O.I.H.G.S.X.
0.4457.20.87At4g29810829103ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.O.I.H.G.S.X.
0.4355.30.89At1g73030843634VPS46.2F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.4355.30.87At4g35310829685CPK5 (calmodulin-domain protein kinase 5)calmodulin-domain protein kinase CDPK isoform 5 (CPK5)O.I.H.G.S.X.
0.4253.90.87At3g25070822098RIN4 (RPM1 INTERACTING PROTEIN 4)Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation.O.I.H.G.S.X.
0.4152.40.87At2g19830816502SNF7.2F:unknown;P:vesicle-mediated transport;C:ESCRT III complex, plasma membrane;MPFOBAO.I.H.G.S.X.
0.4152.40.88At5g21090832233leucine-rich repeat protein, putativeF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.H.G.S.X.
0.4152.40.87At4g22260828321IM (IMMUTANS)Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.O.I.H.G.S.X.
0.4152.40.88At4g31170829245protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.4050.80.88At1g23490838957ATARF1 (ADP-RIBOSYLATION FACTOR 1)Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.4050.80.88At3g54300824597ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.O.I.H.G.S.X.
0.4050.80.90At5g53530835435VPS26A (VACUOLAR PROTEIN SORTING 26A)Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.O.I.H.G.S.X.
0.3948.40.88At1g31940840084unknown proteinF:unknown;P:unknown;C:plasma membrane;PO.I.H.G.S.X.
0.3948.40.88At3g12800820462SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome, plasma membrane;BOMFPAVO.I.H.G.S.X.
0.3846.70.88At5g04260830305WCRKC2 (WCRKC THIOREDOXIN 2)Encodes a thioredoxin (WCRKC2) localized in chloroplast stroma. Contains a WCRKC motif.O.I.H.G.S.X.
0.3745.00.87At2g42390818840protein kinase C substrate, heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFOPO.I.H.G.S.X.
0.3643.60.87At1g01550839536BPS1 (BYPASS 1)BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signalO.I.H.G.S.X.
0.3643.60.87At5g39510833947SGR4 (SHOOT GRAVITROPSIM 4)Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.O.I.H.G.S.X.
0.3643.60.87At5g27840832846TOPP8encodes a serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.O.I.H.G.S.X.
0.3541.60.87At3g29400822601ATEXO70E1 (exocyst subunit EXO70 family protein E1)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.H.G.S.X.
0.3541.60.87At3g46010823744ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo.O.I.H.G.S.X.
0.3541.60.87At3g60590825230unknown proteinF:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;PBOO.I.H.G.S.X.
0.3439.80.88At3g29350822593AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2)Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.H.G.S.X.
0.3439.80.87At1g64280842733NPR1 (NONEXPRESSER OF PR GENES 1)This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens.O.I.H.G.S.X.
0.3338.10.89At4g01370828151ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)Encodes a nuclear and cytoplasmically localized MAP kinase involved in mediating responses to pathogens. Its substrates include MKS1.O.I.H.G.S.X.
0.3338.10.87At3g46000823743ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)Encodes depolymerizing factor 2.O.I.H.G.S.X.
0.3338.10.88At2g39840818571TOPP4Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.O.I.H.G.S.X.
0.3235.70.87At1g70490843385ARFA1DA member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.3235.70.87At1g11890837737SEC22member of SEC22 Gene FamilyO.I.H.G.S.X.
0.3133.80.88At1g01230839331ORMDL family proteinF:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPOO.I.H.G.S.X.
0.3133.80.87At1g04960839346-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.H.G.S.X.
0.3133.80.87At2g11520815625CRCK3high overall homology to CRCK1O.I.H.G.S.X.
0.3032.10.87At5g59890836111ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)actin depolymerizing factor 4 (ADF4) mRNA, complete cdsO.I.H.G.S.X.
0.3032.10.87At5g22360832297ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.O.I.H.G.S.X.
0.2930.30.87At2g45980819206unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2930.30.87At4g26240828730unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.2930.30.87At5g54540835542-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.2726.20.87At4g02080827368ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.H.G.S.X.
0.2726.20.88At3g54840824649ARA6Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.O.I.H.G.S.X.
0.2726.20.88At4g12230826831esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOMPAFVO.I.H.G.S.X.
0.2624.40.88At4g22750828372zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.2522.60.87At1g04690839450KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)F:oxidoreductase activity, potassium channel activity;P:oxidation reduction, potassium ion transport;C:plasma membrane, membrane;BOFMPAO.I.H.G.S.X.
0.2420.70.87At4g19140827652unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2420.70.87At5g60750836196CAAX amino terminal protease family proteinF:endopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOPAO.I.H.G.S.X.
0.2420.70.87At3g48760824037zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPO.I.H.G.S.X.
0.2420.70.87At2g45010819109unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.H.G.S.X.
0.2319.30.87At5g65960836726unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.2319.30.87At5g07370830628IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA)Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphateO.I.H.G.S.X.
0.2319.30.87At1g09920837524TRAF-type zinc finger-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.2217.50.87At3g22950821868ATARFC1 (ADP-ribosylation factor C1)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins.O.I.H.G.S.X.
0.2115.80.88At5g59880836110ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)Encodes actin depolymerizing factor 3 (ADF3).O.I.H.G.S.X.
0.2115.80.87At3g05010819662transmembrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:membrane;MPBOO.I.H.G.S.X.
0.2115.80.87At3g13410820541unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.H.G.S.X.
0.1912.70.87At5g52210835297ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.H.G.S.X.
0.1811.40.87At4g17640827484CKB2Encodes casein kinase II beta (regulatory) subunit.O.I.H.G.S.X.
0.168.80.87At2g36360818209kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAO.I.H.G.S.X.
0.157.80.87At1g50170841439ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesisO.I.H.G.S.X.
0.146.80.87At2g27600817306SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.O.I.H.G.S.X.
0.114.10.87At5g49940835057NFU2 (NIFU-LIKE PROTEIN 2)Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
75.499.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
64.099.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.199.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
49.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.299.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.299.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.899.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
44.599.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.299.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
44.099.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.799.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.399.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.199.8GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
42.099.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.799.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.599.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
39.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.899.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.599.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.099.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.399.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.199.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.999.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
28.499.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.399.6GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
20.199.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.599.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
17.699.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.999.5GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
15.599.5GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
14.899.4GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
13.699.4GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
13.699.4GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
13.099.4GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination StudyLink to GEO
12.999.3GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination StudyLink to GEO
10.599.2GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.799.1GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.699.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.399.1GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.899.0GSM133721Deeken_A-1-Deeke-Tum_SLD_REP2GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thalianaLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0525GO:0016192The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.Link to AmiGO
0.0472GO:0009862The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.Link to AmiGO
0.0432GO:0006623The process of directing proteins towards the vacuole, usually using signals contained within the protein.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.049304130SNARE interactions in vesicular transportLink to KEGG PATHWAY
0.043304144EndocytosisLink to KEGG PATHWAY
0.024100590Arachidonic acid metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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