CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g24860

Gene name chaperone protein dnaJ-related

Module size 5 genes

NF 0.17

%ile 13.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.57 73.8 1.00 At2g24860 817023 chaperone protein dnaJ-related F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;PBMOF O.I. H.G. S.X.
0.24 20.7 0.91 At5g04260 830305 WCRKC2 (WCRKC THIOREDOXIN 2) Encodes a thioredoxin (WCRKC2) localized in chloroplast stroma. Contains a WCRKC motif. O.I. H.G. S.X.
0.17 10.2 0.90 At2g37920 818368 emb1513 (embryo defective 1513) F:copper ion transmembrane transporter activity;P:embryonic development ending in seed dormancy;C:unknown;P O.I. H.G. S.X.
0.12 4.9 0.90 At5g19855 832106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. H.G. S.X.
0.09 2.8 0.90 At1g10500 837590 ATCPISCA (chloroplast-localized IscA-like protein) Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.57	73.8	1.00	At2g24860	817023	chaperone protein dnaJ-related	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;PBMOF	O.I.	H.G.	S.X.
0.24	20.7	0.91	At5g04260	830305	WCRKC2 (WCRKC THIOREDOXIN 2)	Encodes a thioredoxin (WCRKC2) localized in chloroplast stroma. Contains a WCRKC motif.	O.I.	H.G.	S.X.
0.17	10.2	0.90	At2g37920	818368	emb1513 (embryo defective 1513)	F:copper ion transmembrane transporter activity;P:embryonic development ending in seed dormancy;C:unknown;P	O.I.	H.G.	S.X.
0.12	4.9	0.90	At5g19855	832106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	H.G.	S.X.
0.09	2.8	0.90	At1g10500	837590	ATCPISCA (chloroplast-localized IscA-like protein)	Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
102.0 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
81.1 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
78.3 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.8 99.8 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
61.8 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.4 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.3 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
49.4 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.5 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
46.6 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.5 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
44.7 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.4 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.5 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.6 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.5 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.4 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.7 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.5 99.5 GSM106833 opr3_JA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
17.0 99.5 GSM106919 opr3_OPDA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
16.1 99.5 GSM106825 opr3_0 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
15.7 99.5 GSM106934 opr3_OPDA_8 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
15.5 99.5 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
15.1 99.4 GSM253199 Nontransgenic(ga1-3rgargl2)-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
14.1 99.4 GSM106909 opr3-JA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
13.3 99.4 GSM106827 opr3_0 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
13.1 99.4 GSM106907 opr3_JA_0.5 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.8 99.3 GSM253200 Nontransgenic(ga1-3rgargl2)-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
12.8 99.3 E-MEXP-1592-raw-cel-1617526864
12.5 99.3 GSM253201 Nontransgenic(ga1-3rgargl2)-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
12.4 99.3 GSM184476 Lateral Root Cap root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.4 99.3 GSM232889 Wt.3-1.0 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
12.2 99.3 GSM106920 opr3_OPDA_0.5 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.9 99.3 E-MEXP-1592-raw-cel-1617526872
11.8 99.3 GSM106922 opr3_OPDA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.2 99.2 GSM106973 ws_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.2 99.2 GSM232882 Mut.3-2.90 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
10.7 99.2 GSM106910 opr3_JA_2 hrs_rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.4 99.2 E-MEXP-1592-raw-cel-1617526904
10.2 99.2 GSM176880 AWP_Control_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.9 99.1 GSM106924 opr3_OPDA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.9 99.1 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.8 99.1 GSM106908 opr3_JA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.8 99.1 GSM232885 Wt.3-1.90 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
9.6 99.1 E-MEXP-1592-raw-cel-1617526992
9.5 99.1 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.4 99.1 E-MEXP-1592-raw-cel-1617526936
9.4 99.1 E-MEXP-1592-raw-cel-1617526848
9.3 99.1 GSM106923 opr3_OPDA_2 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.3 99.1 E-MEXP-1592-raw-cel-1617526896
9.1 99.1 GSM47033 dcl3-1 23 GSE2473 Small RNA biogenesis mutants
9.0 99.1 E-MEXP-1592-raw-cel-1617526880
9.0 99.1 GSM106912 opr3_JA 8hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.0 99.1 E-MEXP-1592-raw-cel-1617526840
8.9 99.0 GSM47016 Ler 6 GSE2473 Small RNA biogenesis mutants
8.9 99.0 GSM232887 Wt.3-1.240 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
8.8 99.0 E-MEXP-1592-raw-cel-1617527000
8.8 99.0 GSM128729 Hennig_1-1_flower-buds-CK_021114_1_A_Rep1_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
8.7 99.0 GSM47031 dcl3-121 GSE2473 Small RNA biogenesis mutants
8.7 99.0 E-MEXP-1592-raw-cel-1617526968
8.7 99.0 GSM47018 Ler 8 GSE2473 Small RNA biogenesis mutants
8.7 99.0 E-MEXP-1592-raw-cel-1617526912
8.7 99.0 E-MEXP-1592-raw-cel-1617526976
8.6 99.0 GSM232884 Mut.3-2.240 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
8.6 99.0 E-MEXP-1592-raw-cel-1617526944

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
102.0	99.9	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
81.1	99.9	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
78.3	99.9	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.8	99.8	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
61.8	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.4	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.3	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
49.4	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.5	99.8	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
46.6	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.5	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
44.7	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.4	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.5	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.6	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.5	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.4	99.6	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.7	99.6	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.5	99.5	GSM106833	opr3_JA_0.5 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
17.0	99.5	GSM106919	opr3_OPDA_0.5 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
16.1	99.5	GSM106825	opr3_0 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
15.7	99.5	GSM106934	opr3_OPDA_8 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
15.5	99.5	GSM176879	AWP_Control_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
15.1	99.4	GSM253199	Nontransgenic(ga1-3rgargl2)-DEX-REP1	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
14.1	99.4	GSM106909	opr3-JA_2 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
13.3	99.4	GSM106827	opr3_0 hr_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
13.1	99.4	GSM106907	opr3_JA_0.5 hr_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.8	99.3	GSM253200	Nontransgenic(ga1-3rgargl2)-DEX-REP2	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
12.8	99.3	E-MEXP-1592-raw-cel-1617526864
12.5	99.3	GSM253201	Nontransgenic(ga1-3rgargl2)-DEX-REP3	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
12.4	99.3	GSM184476	Lateral Root Cap root cells 2hr KCl control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.4	99.3	GSM232889	Wt.3-1.0	GSE9201	Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
12.2	99.3	GSM106920	opr3_OPDA_0.5 hr_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.9	99.3	E-MEXP-1592-raw-cel-1617526872
11.8	99.3	GSM106922	opr3_OPDA_2 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.2	99.2	GSM106973	ws_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.2	99.2	GSM232882	Mut.3-2.90	GSE9201	Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
10.7	99.2	GSM106910	opr3_JA_2 hrs_rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.4	99.2	E-MEXP-1592-raw-cel-1617526904
10.2	99.2	GSM176880	AWP_Control_2	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.9	99.1	GSM106924	opr3_OPDA_2 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.9	99.1	GSM284384	Arabidopsis GEP5	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.8	99.1	GSM106908	opr3_JA_0.5 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.8	99.1	GSM232885	Wt.3-1.90	GSE9201	Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
9.6	99.1	E-MEXP-1592-raw-cel-1617526992
9.5	99.1	GSM131592	ATGE_36_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.4	99.1	E-MEXP-1592-raw-cel-1617526936
9.4	99.1	E-MEXP-1592-raw-cel-1617526848
9.3	99.1	GSM106923	opr3_OPDA_2 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.3	99.1	E-MEXP-1592-raw-cel-1617526896
9.1	99.1	GSM47033	dcl3-1 23	GSE2473	Small RNA biogenesis mutants
9.0	99.1	E-MEXP-1592-raw-cel-1617526880
9.0	99.1	GSM106912	opr3_JA 8hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.0	99.1	E-MEXP-1592-raw-cel-1617526840
8.9	99.0	GSM47016	Ler 6	GSE2473	Small RNA biogenesis mutants
8.9	99.0	GSM232887	Wt.3-1.240	GSE9201	Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
8.8	99.0	E-MEXP-1592-raw-cel-1617527000
8.8	99.0	GSM128729	Hennig_1-1_flower-buds-CK_021114_1_A_Rep1_ATH1	GSE5526	Transcriptional Programs of Early Reproductive Stages in Arabidopsis
8.7	99.0	GSM47031	dcl3-121	GSE2473	Small RNA biogenesis mutants
8.7	99.0	E-MEXP-1592-raw-cel-1617526968
8.7	99.0	GSM47018	Ler 8	GSE2473	Small RNA biogenesis mutants
8.7	99.0	E-MEXP-1592-raw-cel-1617526912
8.7	99.0	E-MEXP-1592-raw-cel-1617526976
8.6	99.0	GSM232884	Mut.3-2.240	GSE9201	Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
8.6	99.0	E-MEXP-1592-raw-cel-1617526944

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.080 1 GO:0016226 The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
0.019 1 GO:0045454 Any process that maintains the redox environment of a cell or compartment within a cell.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.080	1	GO:0016226	The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
0.019	1	GO:0045454	Any process that maintains the redox environment of a cell or compartment within a cell.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	At2g24860
Gene name	chaperone protein dnaJ-related
Module size	5 genes
NF	0.17
%ile	13.8

Co-expression analysis

Gene ID At2g24860 Gene name chaperone protein dnaJ-related Module size 5 genes NF 0.17 %ile 13.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0801GO:0016226The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.0.0191GO:0045454Any process that maintains the redox environment of a cell or compartment within a cell.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g24860

Gene name chaperone protein dnaJ-related

Module size 5 genes

NF 0.17

%ile 13.8

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.080 1 GO:0016226 The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
0.019 1 GO:0045454 Any process that maintains the redox environment of a cell or compartment within a cell.

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays