CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g24180

Gene name CYP71B6 (CYTOCHROME P450 71B6)

Module size 5 genes

NF 0.07

%ile 4.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.61 76.7 1.00 At2g24180 816952 CYP71B6 (CYTOCHROME P450 71B6) cytochrome P450 monooxygenase O.I. H.G. S.X.
0.29 30.3 0.86 At2g38860 818470 YLS5 Encodes protease I (pfpI)-like protein YLS5. O.I. H.G. S.X.
0.09 2.8 0.85 At3g24503 822042 ALDH2C4 Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively O.I. H.G. S.X.
0.08 2.3 0.87 At3g48890 824050 ATMP2 putative progesterone-binding protein homolog (Atmp2) mRNA, O.I. H.G. S.X.
0.01 0.2 0.86 At2g17760 816285 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PFMO O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.61	76.7	1.00	At2g24180	816952	CYP71B6 (CYTOCHROME P450 71B6)	cytochrome P450 monooxygenase	O.I.	H.G.	S.X.
0.29	30.3	0.86	At2g38860	818470	YLS5	Encodes protease I (pfpI)-like protein YLS5.	O.I.	H.G.	S.X.
0.09	2.8	0.85	At3g24503	822042	ALDH2C4	Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively	O.I.	H.G.	S.X.
0.08	2.3	0.87	At3g48890	824050	ATMP2	putative progesterone-binding protein homolog (Atmp2) mRNA,	O.I.	H.G.	S.X.
0.01	0.2	0.86	At2g17760	816285	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PFMO	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
117.1 99.9 E-MEXP-807-raw-cel-1173273116
105.2 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
98.7 99.9 E-MEXP-807-raw-cel-1173273088
87.5 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
86.2 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.5 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
82.3 99.9 E-MEXP-807-raw-cel-1173273252
64.0 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.8 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
56.1 99.8 E-MEXP-807-raw-cel-1173273144
54.6 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.1 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.1 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.5 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.9 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.7 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.3 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.7 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.6 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
46.9 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.0 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.9 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.1 99.8 E-MEXP-807-raw-cel-1173273223
34.2 99.7 E-MEXP-807-raw-cel-1173273196
33.3 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
30.5 99.7 E-MEXP-807-raw-cel-1173273060
27.5 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.4 99.6 E-MEXP-1138-raw-cel-1432772746
24.8 99.6 E-MEXP-1138-raw-cel-1432773386
24.6 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.5 99.6 E-MEXP-1138-raw-cel-1432773258
23.2 99.6 E-MEXP-807-raw-cel-1173273170
22.8 99.6 E-MEXP-1138-raw-cel-1432773290
21.9 99.6 E-MEXP-1138-raw-cel-1432772810
21.8 99.6 E-MEXP-1138-raw-cel-1432773226
21.7 99.6 E-MEXP-1138-raw-cel-1432773322
21.7 99.6 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
21.4 99.6 E-MEXP-1138-raw-cel-1432772874
21.1 99.6 E-MEXP-1138-raw-cel-1432772778
21.0 99.6 E-MEXP-1138-raw-cel-1432772842
20.7 99.6 E-MEXP-1138-raw-cel-1432773034
20.3 99.6 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
19.0 99.5 E-MEXP-1138-raw-cel-1432773162
19.0 99.5 E-MEXP-1138-raw-cel-1432773354
18.9 99.5 E-MEXP-1138-raw-cel-1432773066
18.6 99.5 E-MEXP-1138-raw-cel-1432772906
18.5 99.5 E-MEXP-1138-raw-cel-1432772522
18.2 99.5 E-MEXP-1138-raw-cel-1432772714
18.2 99.5 E-MEXP-1138-raw-cel-1432772586
18.0 99.5 E-MEXP-1138-raw-cel-1432772618
17.8 99.5 E-MEXP-1138-raw-cel-1432772554
17.6 99.5 E-MEXP-1138-raw-cel-1432773130
17.6 99.5 E-MEXP-1138-raw-cel-1432773194
17.5 99.5 E-MEXP-1138-raw-cel-1432773098
17.2 99.5 E-MEXP-1138-raw-cel-1432772650
16.9 99.5 E-MEXP-1138-raw-cel-1432772938
16.2 99.5 E-MEXP-1138-raw-cel-1432772970
16.0 99.5 E-MEXP-1138-raw-cel-1432773002
15.7 99.5 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.6 99.5 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
15.3 99.4 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
14.3 99.4 E-MEXP-1138-raw-cel-1432772682
14.2 99.4 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
14.1 99.4 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
14.0 99.4 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
13.8 99.4 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
13.4 99.4 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.0 99.4 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.8 99.3 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
12.2 99.3 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
11.6 99.3 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
11.6 99.3 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
11.2 99.2 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.9 99.2 GSM106973 ws_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.9 99.2 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.8 99.2 GSM106828 opr3_0 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.7 99.2 GSM106969 opr3_OPDA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.9 99.1 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.8 99.1 E-ATMX-35-raw-cel-1574334864
9.8 99.1 GSM106970 opr3_OPDA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.7 99.1 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.6 99.1 E-ATMX-35-raw-cel-1574334880
9.4 99.1 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.3 99.1 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.3 99.1 GSM106917 opr3_JA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.2 99.1 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
8.9 99.0 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
117.1	99.9	E-MEXP-807-raw-cel-1173273116
105.2	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
98.7	99.9	E-MEXP-807-raw-cel-1173273088
87.5	99.9	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
86.2	99.9	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
83.5	99.9	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
82.3	99.9	E-MEXP-807-raw-cel-1173273252
64.0	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.8	99.8	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
56.1	99.8	E-MEXP-807-raw-cel-1173273144
54.6	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.1	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.1	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
52.5	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.9	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.7	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.3	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.7	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.6	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
46.9	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.8	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.0	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.9	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.1	99.8	E-MEXP-807-raw-cel-1173273223
34.2	99.7	E-MEXP-807-raw-cel-1173273196
33.3	99.7	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
30.5	99.7	E-MEXP-807-raw-cel-1173273060
27.5	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.4	99.6	E-MEXP-1138-raw-cel-1432772746
24.8	99.6	E-MEXP-1138-raw-cel-1432773386
24.6	99.6	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.5	99.6	E-MEXP-1138-raw-cel-1432773258
23.2	99.6	E-MEXP-807-raw-cel-1173273170
22.8	99.6	E-MEXP-1138-raw-cel-1432773290
21.9	99.6	E-MEXP-1138-raw-cel-1432772810
21.8	99.6	E-MEXP-1138-raw-cel-1432773226
21.7	99.6	E-MEXP-1138-raw-cel-1432773322
21.7	99.6	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
21.4	99.6	E-MEXP-1138-raw-cel-1432772874
21.1	99.6	E-MEXP-1138-raw-cel-1432772778
21.0	99.6	E-MEXP-1138-raw-cel-1432772842
20.7	99.6	E-MEXP-1138-raw-cel-1432773034
20.3	99.6	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
19.0	99.5	E-MEXP-1138-raw-cel-1432773162
19.0	99.5	E-MEXP-1138-raw-cel-1432773354
18.9	99.5	E-MEXP-1138-raw-cel-1432773066
18.6	99.5	E-MEXP-1138-raw-cel-1432772906
18.5	99.5	E-MEXP-1138-raw-cel-1432772522
18.2	99.5	E-MEXP-1138-raw-cel-1432772714
18.2	99.5	E-MEXP-1138-raw-cel-1432772586
18.0	99.5	E-MEXP-1138-raw-cel-1432772618
17.8	99.5	E-MEXP-1138-raw-cel-1432772554
17.6	99.5	E-MEXP-1138-raw-cel-1432773130
17.6	99.5	E-MEXP-1138-raw-cel-1432773194
17.5	99.5	E-MEXP-1138-raw-cel-1432773098
17.2	99.5	E-MEXP-1138-raw-cel-1432772650
16.9	99.5	E-MEXP-1138-raw-cel-1432772938
16.2	99.5	E-MEXP-1138-raw-cel-1432772970
16.0	99.5	E-MEXP-1138-raw-cel-1432773002
15.7	99.5	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.6	99.5	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
15.3	99.4	GSM142736	DH001_ATH1_A3-TCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
14.3	99.4	E-MEXP-1138-raw-cel-1432772682
14.2	99.4	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
14.1	99.4	GSM142739	DH001_ATH1_A6-TCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
14.0	99.4	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
13.8	99.4	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
13.4	99.4	GSM284389	Arabidopsis GMPE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.0	99.4	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.8	99.3	GSM311276	Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
12.2	99.3	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
11.6	99.3	GSM311275	Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
11.6	99.3	GSM131592	ATGE_36_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
11.2	99.2	GSM239252	Columbia glabrous (C24) wild type stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.9	99.2	GSM106973	ws_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.9	99.2	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.8	99.2	GSM106828	opr3_0 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.7	99.2	GSM106969	opr3_OPDA_22 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.9	99.1	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.8	99.1	E-ATMX-35-raw-cel-1574334864
9.8	99.1	GSM106970	opr3_OPDA_22 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.7	99.1	GSM106913	opr3_JA_8 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.6	99.1	E-ATMX-35-raw-cel-1574334880
9.4	99.1	GSM131591	ATGE_36_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.3	99.1	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.3	99.1	GSM106917	opr3_JA_22 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.2	99.1	GSM106916	opr3_JA_22 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
8.9	99.0	GSM131593	ATGE_36_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0009699 The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.125	1	GO:0009699	The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.019 1 00940 Phenylpropanoid biosynthesis

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.019	1	00940	Phenylpropanoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g24180
Gene name	CYP71B6 (CYTOCHROME P450 71B6)
Module size	5 genes
NF	0.07
%ile	4.0

Co-expression analysis

Gene ID At2g24180 Gene name CYP71B6 (CYTOCHROME P450 71B6) Module size 5 genes NF 0.07 %ile 4.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.1251GO:0009699The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.019100940Phenylpropanoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g24180

Gene name CYP71B6 (CYTOCHROME P450 71B6)

Module size 5 genes

NF 0.07

%ile 4.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0009699 The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid.

SF Genes KEGG ID Pathway name Link to KEGG
0.019 1 00940 Phenylpropanoid biosynthesis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays