Co-expression analysis

Gene ID At2g19620
Gene name Ndr family protein
Module size 5 genes
NF 0.05
%ile 3.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g19620816481Ndr family proteinF:molecular_function unknown;P:cell differentiation;C:cellular_component unknown;MBPOO.I.H.G.S.X.
0.2014.40.84At1g75310843868AUL1F:heat shock protein binding;P:protein folding;C:unknown;MOBFPVAO.I.H.G.S.X.
0.071.90.85At2g02170814748remorin family proteinF:DNA binding;P:biological_process unknown;C:plasma membrane;OBMPFAVO.I.H.G.S.X.
0.040.90.84At3g13560820558glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOO.I.H.G.S.X.
0.010.20.86At1g09160837436protein phosphatase 2C-related / PP2C-relatedF:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:plasma membrane;PMOFBVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
171.6100.0GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
154.599.9GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
118.099.9GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
60.399.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
60.099.8GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
59.499.8GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
54.599.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
53.199.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.899.8GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
47.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.099.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.499.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.499.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.399.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.499.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.399.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.299.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.099.7GSM128733Hennig_1-5_flowers-CK_021114_2_B_Rep2_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
27.799.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.499.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.199.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.499.6E-MEXP-285-raw-cel-440783335
19.899.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.099.5GSM62696Columbia flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
16.599.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.299.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.999.5GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
14.699.4E-MEXP-807-raw-cel-1173273116
14.099.4E-MEXP-285-raw-cel-440783273
13.099.4E-MEXP-1797-raw-cel-1669767940
12.099.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.099.3GSM131598ATGE_39_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.699.3GSM47028dcl2-1 18GSE2473Small RNA biogenesis mutantsLink to GEO
11.199.2GSM62695Columbia flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
11.099.2E-MEXP-807-raw-cel-1173273088
9.999.1E-MEXP-807-raw-cel-1173273196
9.999.1GSM128730Hennig_1-2_flowers-CK_021114_2_A_Rep1_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
9.899.1GSM62699arf6/arf6 ARF8/arf8 flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
9.899.1E-MEXP-1797-raw-cel-1669768075
9.899.1E-MEXP-1797-raw-cel-1669767949
9.799.1E-MEXP-1797-raw-cel-1669767985
9.599.1GSM47047rdr2-1 37GSE2473Small RNA biogenesis mutantsLink to GEO
9.599.1GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
9.499.1GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.399.1E-MEXP-1797-raw-cel-1669768030
8.899.0GSM131597ATGE_39_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.799.0E-ATMX-1-raw-cel-1112746095

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0651GO:0030154The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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