CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g16160

Gene name transposable element gene

Module size 26 genes

NF 0.40

%ile 55.9

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.54 69.5 1.00 At2g16160 816113 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.68 82.2 0.81 At3g14670 820695 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. H.G. S.X.
0.56 73.0 0.76 At3g31310 822878 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.56 73.0 0.77 At2g04370 814976 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.55 70.6 0.78 At5g39140 833907 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.50 65.3 0.80 At2g12880 815767 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPV O.I. H.G. S.X.
0.50 65.3 0.77 At5g36840 833651 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.49 63.5 0.79 At2g20970 816631 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV O.I. H.G. S.X.
0.47 61.2 0.75 At3g32080 822963 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 0.79 At3g62490 825423 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.46 59.8 0.78 At5g35290 833483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. H.G. S.X.
0.44 57.2 0.79 At3g43150 823381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.40 50.8 0.83 At1g35614 840459 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.40 50.8 0.77 At2g14020 815886 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.39 48.4 0.76 At1g44990 841064 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system O.I. H.G. S.X.
0.38 46.7 0.75 At3g50320 824194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.38 46.7 0.78 At5g27190 3770742 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.38 46.7 0.75 At2g10020 815459 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.37 45.0 0.74 At2g14410 3768296 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.37 45.0 0.75 At3g29600 822625 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.36 43.6 0.77 At5g37880 833767 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.33 38.1 0.81 At3g04250 819580 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO O.I. H.G. S.X.
0.32 35.7 0.80 At3g46380 823785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.25 22.6 0.76 At5g36900 833657 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. H.G. S.X.
0.21 15.8 0.79 At3g42310 823222 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VMPO O.I. H.G. S.X.
0.19 12.7 0.80 At2g06140 815170 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.54	69.5	1.00	At2g16160	816113	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.68	82.2	0.81	At3g14670	820695	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	H.G.	S.X.
0.56	73.0	0.76	At3g31310	822878	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.56	73.0	0.77	At2g04370	814976	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.55	70.6	0.78	At5g39140	833907	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.50	65.3	0.80	At2g12880	815767	zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPV	O.I.	H.G.	S.X.
0.50	65.3	0.77	At5g36840	833651	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	0.79	At2g20970	816631	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV	O.I.	H.G.	S.X.
0.47	61.2	0.75	At3g32080	822963	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	0.79	At3g62490	825423	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.46	59.8	0.78	At5g35290	833483	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	H.G.	S.X.
0.44	57.2	0.79	At3g43150	823381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.40	50.8	0.83	At1g35614	840459	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.40	50.8	0.77	At2g14020	815886	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.39	48.4	0.76	At1g44990	841064	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	O.I.	H.G.	S.X.
0.38	46.7	0.75	At3g50320	824194	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.38	46.7	0.78	At5g27190	3770742	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.38	46.7	0.75	At2g10020	815459	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.37	45.0	0.74	At2g14410	3768296	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.37	45.0	0.75	At3g29600	822625	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.36	43.6	0.77	At5g37880	833767	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.33	38.1	0.81	At3g04250	819580	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO	O.I.	H.G.	S.X.
0.32	35.7	0.80	At3g46380	823785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.25	22.6	0.76	At5g36900	833657	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	H.G.	S.X.
0.21	15.8	0.79	At3g42310	823222	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VMPO	O.I.	H.G.	S.X.
0.19	12.7	0.80	At2g06140	815170	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
78.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
48.8 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.6 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.5 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.4 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.4 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.4 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.0 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.9 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.8 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.1 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.2 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.0 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.4 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.4 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.3 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.6 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.5 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.7 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.6 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.8 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.0 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.6 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.4 99.6 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
21.3 99.6 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
19.9 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.3 99.6 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
19.1 99.6 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.7 99.5 E-MEXP-1443-raw-cel-1581869573
18.3 99.5 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
17.5 99.5 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
17.4 99.5 E-ATMX-1-raw-cel-1112746095
17.4 99.5 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.4 99.5 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
16.1 99.5 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
14.8 99.4 GSM133973 Birnbaum_1-3_src5-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
14.0 99.4 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.3 99.4 E-MEXP-1138-raw-cel-1432773290
13.2 99.4 GSM133970 Birnbaum_1-21_LRC-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
11.9 99.3 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.7 99.3 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
11.4 99.3 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
11.1 99.2 E-MEXP-1138-raw-cel-1432773258
10.1 99.2 GSM133991 Birnbaum_1-24_gl2-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
9.5 99.1 GSM133971 Birnbaum_1-1_src5-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
9.4 99.1 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
9.3 99.1 GSM133988 Birnbaum_1-18_wol-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
9.1 99.1 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.0 99.1 GSM133993 Birnbaum_1-26_J0571-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
8.7 99.0 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
8.6 99.0 GSM133769 Lindsey_1-21_torpedo-basal_Rep6_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
78.3	99.9	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
48.8	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.6	99.8	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.5	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.4	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.4	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.4	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.0	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.9	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.8	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.1	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.2	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.0	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.4	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.4	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.3	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.6	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.5	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
34.7	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
34.6	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.8	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.0	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.6	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
23.4	99.6	GSM133968	Birnbaum_1-19_LRC-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
21.3	99.6	GSM284386	Arabidopsis GSUS3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
19.9	99.6	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.3	99.6	GSM142739	DH001_ATH1_A6-TCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
19.1	99.6	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.7	99.5	E-MEXP-1443-raw-cel-1581869573
18.3	99.5	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
17.5	99.5	GSM133969	Birnbaum_1-20_LRC-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
17.4	99.5	E-ATMX-1-raw-cel-1112746095
17.4	99.5	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.4	99.5	GSM142736	DH001_ATH1_A3-TCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
16.1	99.5	GSM184900	Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
14.8	99.4	GSM133973	Birnbaum_1-3_src5-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
14.0	99.4	GSM284387	Arabidopsis GSUS4b	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.3	99.4	E-MEXP-1138-raw-cel-1432773290
13.2	99.4	GSM133970	Birnbaum_1-21_LRC-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
11.9	99.3	GSM133758	Lindsey_1-11_heart-stage-root_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.7	99.3	GSM184918	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
11.4	99.3	GSM131699	ATGE_81_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
11.1	99.2	E-MEXP-1138-raw-cel-1432773258
10.1	99.2	GSM133991	Birnbaum_1-24_gl2-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
9.5	99.1	GSM133971	Birnbaum_1-1_src5-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
9.4	99.1	GSM131698	ATGE_81_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.3	99.1	GSM133988	Birnbaum_1-18_wol-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
9.1	99.1	GSM131593	ATGE_36_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.0	99.1	GSM133993	Birnbaum_1-26_J0571-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
8.7	99.0	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
8.6	99.0	GSM133769	Lindsey_1-21_torpedo-basal_Rep6_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At2g16160
Gene name	transposable element gene
Module size	26 genes
NF	0.40
%ile	55.9

Co-expression analysis

Gene ID At2g16160 Gene name transposable element gene Module size 26 genes NF 0.40 %ile 55.9

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g16160

Gene name transposable element gene

Module size 26 genes

NF 0.40

%ile 55.9

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays