Co-expression analysis

Gene ID At2g15800
Gene name transposable element gene
Module size 57 genes
NF 0.71
%ile 89.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9797.61.00At2g15800816075transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8894.00.89At4g045903770515transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8391.40.88At3g22940821866F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8391.40.90At2g14570815944transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8290.90.90At2g143503768589transposable element genepseudogene of unknown proteinO.I.H.G.S.X.
0.8290.90.90At1g672403767657transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8190.40.89At3g1095082026660S ribosomal protein L37a (RPL37aB)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.H.G.S.X.
0.8089.80.89At2g075103768270transposable element genepseudogene of Ulp1 protease family proteinO.I.H.G.S.X.
0.8089.80.89At5g358203771306transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.89At1g359953766969transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.89At4g045603769781transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.88At1g371103767062transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.90At1g346203766920transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.89At2g14590815946transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7888.60.89At2g214603768354transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7888.60.89At3g42120823184transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7888.60.90At3g452703769649transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7788.00.89At5g28760832988transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7788.00.89At1g43970840996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.7687.40.89At2g07505815323unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7687.40.88At3g28870822521-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.7687.40.89At3g27800822400-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7687.40.89At1g325903766881transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.89At3g27980822422pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFMO.I.H.G.S.X.
0.7586.90.89At3g455203769652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.89At3g13250820524transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.88At1g360403766972transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.89At1g526103767445transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.88At3g13270820526transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.89At1g478163767392transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7486.10.89At2g149303768116transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7486.10.88At4g077503769978transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.88At2g139303768460transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.88At3g29080822555unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.7385.50.88At4g042803769896transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.89At2g149503768119transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.88At2g07740815421transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.90At2g10050815462transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.89At1g366003767017transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.89At2g198403768331transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.88At5g47270--O.I.H.G.S.X.
0.6882.20.88At1g35770840482transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.88At2g127203768565transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.88At3g601703769745transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.92At2g22160816750cysteine endopeptidase-relatedF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;PMOVO.I.H.G.S.X.
0.6579.60.88At5g332503771111transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.88At4g08820826453transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.88At3g428363769502transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.88At1g37080840625transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.89At4g075403770365transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.88At5g348003771185transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.88At5g357103771292transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.88At2g34290817990protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOPFBVAO.I.H.G.S.X.
0.5368.60.88At2g29605817510unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.5368.60.88At2g05030815051transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.89At1g383403767102transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.88At3g30490822762transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
77.899.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
40.799.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.399.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.199.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.799.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.099.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.199.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
34.799.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
34.699.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.599.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.399.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.399.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
32.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.099.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.199.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.899.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.399.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.999.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.499.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.299.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.399.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.299.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.999.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.899.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.499.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.899.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.199.5GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.899.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.799.4E-MEXP-1345-raw-cel-1559561199
12.799.3GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.699.3GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.599.3E-MEXP-1344-raw-cel-1559561563
11.399.3E-MEXP-1344-raw-cel-1559561683
10.699.2E-MEXP-1345-raw-cel-1559561169
10.599.2GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
10.099.2GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.999.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.899.1GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.199.1E-MEXP-1344-raw-cel-1559561593
8.999.0GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.999.0GSM131690ATGE_77_FGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
8.899.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0171GO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.Link to AmiGO
0.0121GO:0042254The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.007103010RibosomeLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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