CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g15410

Gene name transposable element gene

Module size 49 genes

NF 0.48

%ile 67.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.83 91.4 1.00 At2g15410 3768620 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.71 84.2 0.85 At4g04000 3770309 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.67 81.6 0.80 At2g15380 3768619 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.67 81.6 0.80 At3g32190 822986 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV O.I. H.G. S.X.
0.65 79.6 0.82 At2g07240 815294 cysteine-type peptidase F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POFMBV O.I. H.G. S.X.
0.60 75.7 0.78 At5g28600 832959 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.60 75.7 0.78 At5g49440 835004 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.59 74.7 0.80 At1g36970 840606 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. H.G. S.X.
0.59 74.7 0.78 At2g16110 3768127 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.57 73.8 0.76 At2g05200 3768310 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.56 73.0 0.78 At1g42220 3767230 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.56 73.0 0.77 At2g20460 3767852 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.56 73.0 0.80 At5g33260 3771121 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.55 70.6 0.76 At1g40230 840758 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.55 70.6 0.79 At2g06820 815244 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.55 70.6 0.80 At2g29920 817542 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBO O.I. H.G. S.X.
0.54 69.5 0.77 At2g31460 817704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.54 69.5 0.78 At4g07500 826197 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.53 68.6 0.80 At3g26614 3768945 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.53 68.6 0.76 At3g42530 823261 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.52 67.4 0.77 At1g31100 3766864 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.52 67.4 0.77 At1g56675 3767473 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.80 At2g13940 3768461 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.80 At2g15510 3768657 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.77 At2g16000 3768393 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.76 At4g03870 3770320 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.49 63.5 0.77 At3g42920 823343 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.48 62.5 0.80 At4g09710 3770352 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.48 62.5 0.76 At4g03640 825664 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 0.77 At4g07810 3770274 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.46 59.8 0.77 At3g30830 3769152 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.46 59.8 0.77 At1g18200 838399 AtRABA6b (Arabidopsis Rab GTPase homolog A6b) F:protein binding, GTP binding, GTPase activity;P:intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction;C:intracellular;MOFPBAV O.I. H.G. S.X.
0.46 59.8 0.77 At4g08730 826442 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. H.G. S.X.
0.45 58.3 0.77 At2g37730 818350 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. H.G. S.X.
0.45 58.3 0.77 At3g22350 821804 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. H.G. S.X.
0.44 57.2 0.78 At4g04730 825808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.42 53.9 0.79 At5g53740 835455 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.40 50.8 0.77 At2g15540 3768274 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.39 48.4 0.79 At2g17330 3768013 - putative obtusifoliol 14-alpha demethylase. Expressed pseudogene. O.I. H.G. S.X.
0.39 48.4 0.80 At5g20760 832199 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.38 46.7 0.77 At1g32270 840119 ATSYP24 member of SYP2 Gene Family O.I. H.G. S.X.
0.36 43.6 0.79 At3g22870 821859 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.36 43.6 0.77 At3g28170 822443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.35 41.6 0.77 At5g28860 833005 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.32 35.7 0.78 At5g35830 833569 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA O.I. H.G. S.X.
0.30 32.1 0.79 At3g42220 3769425 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.29 30.3 0.77 At4g13610 826994 MEE57 (maternal effect embryo arrest 57) F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFV O.I. H.G. S.X.
0.29 30.3 0.78 At1g41870 840798 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.27 26.2 0.77 At4g07790 3769958 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.83	91.4	1.00	At2g15410	3768620	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.71	84.2	0.85	At4g04000	3770309	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.67	81.6	0.80	At2g15380	3768619	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.67	81.6	0.80	At3g32190	822986	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV	O.I.	H.G.	S.X.
0.65	79.6	0.82	At2g07240	815294	cysteine-type peptidase	F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POFMBV	O.I.	H.G.	S.X.
0.60	75.7	0.78	At5g28600	832959	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.60	75.7	0.78	At5g49440	835004	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.59	74.7	0.80	At1g36970	840606	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	H.G.	S.X.
0.59	74.7	0.78	At2g16110	3768127	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.57	73.8	0.76	At2g05200	3768310	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.56	73.0	0.78	At1g42220	3767230	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.56	73.0	0.77	At2g20460	3767852	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.56	73.0	0.80	At5g33260	3771121	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.55	70.6	0.76	At1g40230	840758	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.55	70.6	0.79	At2g06820	815244	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.55	70.6	0.80	At2g29920	817542	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBO	O.I.	H.G.	S.X.
0.54	69.5	0.77	At2g31460	817704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.54	69.5	0.78	At4g07500	826197	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.80	At3g26614	3768945	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.76	At3g42530	823261	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.52	67.4	0.77	At1g31100	3766864	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.52	67.4	0.77	At1g56675	3767473	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	0.80	At2g13940	3768461	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	0.80	At2g15510	3768657	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	0.77	At2g16000	3768393	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	0.76	At4g03870	3770320	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	0.77	At3g42920	823343	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.48	62.5	0.80	At4g09710	3770352	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.48	62.5	0.76	At4g03640	825664	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	0.77	At4g07810	3770274	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.46	59.8	0.77	At3g30830	3769152	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.46	59.8	0.77	At1g18200	838399	AtRABA6b (Arabidopsis Rab GTPase homolog A6b)	F:protein binding, GTP binding, GTPase activity;P:intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction;C:intracellular;MOFPBAV	O.I.	H.G.	S.X.
0.46	59.8	0.77	At4g08730	826442	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	H.G.	S.X.
0.45	58.3	0.77	At2g37730	818350	fringe-related protein	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	H.G.	S.X.
0.45	58.3	0.77	At3g22350	821804	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	H.G.	S.X.
0.44	57.2	0.78	At4g04730	825808	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.42	53.9	0.79	At5g53740	835455	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.40	50.8	0.77	At2g15540	3768274	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.39	48.4	0.79	At2g17330	3768013	-	putative obtusifoliol 14-alpha demethylase. Expressed pseudogene.	O.I.	H.G.	S.X.
0.39	48.4	0.80	At5g20760	832199	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.38	46.7	0.77	At1g32270	840119	ATSYP24	member of SYP2 Gene Family	O.I.	H.G.	S.X.
0.36	43.6	0.79	At3g22870	821859	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.36	43.6	0.77	At3g28170	822443	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.35	41.6	0.77	At5g28860	833005	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.32	35.7	0.78	At5g35830	833569	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA	O.I.	H.G.	S.X.
0.30	32.1	0.79	At3g42220	3769425	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.29	30.3	0.77	At4g13610	826994	MEE57 (maternal effect embryo arrest 57)	F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFV	O.I.	H.G.	S.X.
0.29	30.3	0.78	At1g41870	840798	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.27	26.2	0.77	At4g07790	3769958	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.8 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.0 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
60.9 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.6 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
58.3 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.1 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.1 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.9 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.7 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.4 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.1 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.5 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.3 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.3 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.0 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.4 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.7 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.3 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.2 99.7 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
34.2 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.3 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.5 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.5 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.6 99.6 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
19.3 99.6 E-MEXP-1443-raw-cel-1581869515
18.1 99.5 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.9 99.5 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
15.5 99.5 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.7 99.4 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.7 99.3 E-MEXP-1443-raw-cel-1581869573
11.7 99.3 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
11.4 99.3 E-MEXP-285-raw-cel-440782791
11.2 99.2 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.0 99.2 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.0 99.2 E-MEXP-285-raw-cel-440782725
10.8 99.2 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.0 99.2 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
8.6 99.0 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
63.8	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.0	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
60.9	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.6	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
58.3	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.1	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.1	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.9	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.7	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.4	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
55.3	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
55.1	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.5	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
52.3	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
52.3	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.0	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.4	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.7	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.3	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
34.2	99.7	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
34.2	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.3	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.5	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.5	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.6	99.6	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
19.3	99.6	E-MEXP-1443-raw-cel-1581869515
18.1	99.5	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.9	99.5	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
15.5	99.5	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.7	99.4	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.7	99.3	E-MEXP-1443-raw-cel-1581869573
11.7	99.3	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
11.4	99.3	E-MEXP-285-raw-cel-440782791
11.2	99.2	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.0	99.2	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.0	99.2	E-MEXP-285-raw-cel-440782725
10.8	99.2	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.0	99.2	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
8.6	99.0	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.030 1 GO:0006891 The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).
0.029 1 GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
0.029 1 GO:0006913 The directed movement of molecules between the nucleus and the cytoplasm.

SF	Genes	GO ID	Process Name
0.030	1	GO:0006891	The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).
0.029	1	GO:0006306	The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
0.029	1	GO:0006913	The directed movement of molecules between the nucleus and the cytoplasm.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.021 1 04130 SNARE interactions in vesicular transport
0.018 1 00270 Cysteine and methionine metabolism
0.002 1 01100 Metabolic pathways

SF	Genes	KEGG ID	Pathway name
0.021	1	04130	SNARE interactions in vesicular transport
0.018	1	00270	Cysteine and methionine metabolism
0.002	1	01100	Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At2g15410
Gene name	transposable element gene
Module size	49 genes
NF	0.48
%ile	67.4

Co-expression analysis

Gene ID At2g15410 Gene name transposable element gene Module size 49 genes NF 0.48 %ile 67.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.021104130SNARE interactions in vesicular transport0.018100270Cysteine and methionine metabolism0.002101100Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g15410

Gene name transposable element gene

Module size 49 genes

NF 0.48

%ile 67.4

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.021 1 04130 SNARE interactions in vesicular transport
0.018 1 00270 Cysteine and methionine metabolism
0.002 1 01100 Metabolic pathways

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays