Co-expression analysis

Gene ID At2g15410
Gene name transposable element gene
Module size 49 genes
NF 0.48
%ile 67.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8391.41.00At2g154103768620transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.85At4g040003770309transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.80At2g153803768619transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.80At3g32190822986-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAVO.I.H.G.S.X.
0.6579.60.82At2g07240815294cysteine-type peptidaseF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POFMBVO.I.H.G.S.X.
0.6075.70.78At5g28600832959transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.78At5g49440835004unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5974.70.80At1g36970840606-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.5974.70.78At2g161103768127-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.76At2g052003768310transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.78At1g422203767230transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.77At2g204603767852transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.80At5g332603771121transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.76At1g40230840758transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.79At2g06820815244transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.80At2g29920817542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOO.I.H.G.S.X.
0.5469.50.77At2g31460817704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5469.50.78At4g07500826197transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.80At3g266143768945transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.76At3g42530823261transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.77At1g311003766864transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.77At1g566753767473transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.80At2g139403768461transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.80At2g155103768657transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.77At2g160003768393transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.76At4g038703770320transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.77At3g42920823343transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.80At4g097103770352transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.76At4g03640825664transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.77At4g078103770274transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.77At3g308303769152transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.77At1g18200838399AtRABA6b (Arabidopsis Rab GTPase homolog A6b)F:protein binding, GTP binding, GTPase activity;P:intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction;C:intracellular;MOFPBAVO.I.H.G.S.X.
0.4659.80.77At4g08730826442unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.4558.30.77At2g37730818350fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.H.G.S.X.
0.4558.30.77At3g22350821804F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.4457.20.78At4g04730825808unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.4253.90.79At5g53740835455unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.4050.80.77At2g155403768274transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3948.40.79At2g173303768013-putative obtusifoliol 14-alpha demethylase. Expressed pseudogene.O.I.H.G.S.X.
0.3948.40.80At5g20760832199transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3846.70.77At1g32270840119ATSYP24member of SYP2 Gene FamilyO.I.H.G.S.X.
0.3643.60.79At3g22870821859F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.3643.60.77At3g28170822443unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3541.60.77At5g28860833005transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.78At5g35830833569ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAO.I.H.G.S.X.
0.3032.10.79At3g422203769425transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.77At4g13610826994MEE57 (maternal effect embryo arrest 57)F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFVO.I.H.G.S.X.
0.2930.30.78At1g41870840798transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2726.20.77At4g077903769958transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.899.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
61.099.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
60.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
58.699.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
58.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
57.199.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
57.199.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
56.999.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
56.799.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
55.499.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
55.399.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
55.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.599.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
52.399.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
52.399.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
52.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.499.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.799.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.399.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
34.299.7GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
34.299.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.399.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.599.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.599.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.699.6GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
19.399.6E-MEXP-1443-raw-cel-1581869515
18.199.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.999.5GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.599.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.799.4GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.799.3E-MEXP-1443-raw-cel-1581869573
11.799.3GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.499.3E-MEXP-285-raw-cel-440782791
11.299.2GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.099.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.099.2E-MEXP-285-raw-cel-440782725
10.899.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
10.099.2GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
8.699.0GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0301GO:0006891The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).Link to AmiGO
0.0291GO:0006306The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.Link to AmiGO
0.0291GO:0006913The directed movement of molecules between the nucleus and the cytoplasm.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.021104130SNARE interactions in vesicular transportLink to KEGG PATHWAY
0.018100270Cysteine and methionine metabolismLink to KEGG PATHWAY
0.002101100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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