Co-expression analysis

Gene ID At2g14300
Gene name transposable element gene
Module size 92 genes
NF 0.23
%ile 23.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g143003768068transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.72At5g46440834687-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4862.50.68At3g42350823228transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.71At1g02230837630ANAC004 (Arabidopsis NAC domain containing protein 4)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.4355.30.75At2g16010816097transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.69At2g03030814832Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBOO.I.H.G.S.X.
0.4355.30.69At3g43840823497oxidoreductase, acting on the CH-CH group of donorsF:oxidoreductase activity, acting on the CH-CH group of donors;P:lipid metabolic process;C:endomembrane system, integral to membrane, cytoplasm;MPOBO.I.H.G.S.X.
0.4253.90.70At5g352403771259transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.67At5g60090836131protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.3745.00.69At3g60790825250F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.H.G.S.X.
0.3643.60.69At1g64410842750transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.60.70At2g28755817425UDP-D-glucuronate carboxy-lyase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFAO.I.H.G.S.X.
0.3643.60.67At5g30520833141unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3541.60.68At2g22520816785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFO.I.H.G.S.X.
0.3439.80.72At5g287003770831transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.67At3g430503769524transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.69At1g17390838311transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.68At4g19620827704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.80.73At4g084903770078transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.67At4g20690827816unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3235.70.68At2g04063814941glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMBOO.I.H.G.S.X.
0.3235.70.68At2g24340816970transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PVO.I.H.G.S.X.
0.3133.80.71At2g07190815288-F:unknown;P:unknown;C:cellular_component unknown;POBMFO.I.H.G.S.X.
0.3032.10.68At4g15710827248unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3032.10.68At1g36670840575transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3032.10.68At5g358003771304transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3032.10.70At4g33290829465F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2930.30.68At3g55670824733-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2930.30.69At1g47350841138F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2930.30.68At1g29480839825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPO.I.H.G.S.X.
0.2930.30.68At5g366603771329transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.67At4g03170828050DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OPMFO.I.H.G.S.X.
0.2830.30.68At2g06500815208hAT dimerisation domain-containing protein / transposase-relatedF:protein dimerization activity;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.H.G.S.X.
0.2830.30.67At3g43760823487transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.30.70At4g24300828533peptidaseF:peptidase activity;P:proteolysis;C:nucleus;PO.I.H.G.S.X.
0.2830.30.70At5g28950833021unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.2624.40.67At2g07705815380unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2624.40.71At2g138903768362transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2624.40.70At2g07300815300transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2522.60.70At5g35830833569ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAO.I.H.G.S.X.
0.2522.60.67At4g043003770120transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.67At4g076003770530transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.68At1g35663840469transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.68At2g42340818835unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.2420.70.69At5g49790835042transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2319.30.67At4g03890825697transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2319.30.67At4g10660826659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2319.30.68At5g66500836782pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.2217.50.67At3g04390819594xanthine dehydrogenase family proteinF:electron carrier activity, oxidoreductase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;MOBFPO.I.H.G.S.X.
0.2217.50.67At4g03160828054-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.2217.50.67At3g30730822811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2217.50.68At1g43330840934myb family protein-relatedF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFVO.I.H.G.S.X.
0.2217.50.70At3g42080823177transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.67At1g32270840119ATSYP24member of SYP2 Gene FamilyO.I.H.G.S.X.
0.2115.80.67At1g42580840863transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.67At2g13950815879DC1 domain-containing proteinF:protein binding, zinc ion binding;P:response to cold;C:nucleus;PMOO.I.H.G.S.X.
0.2115.80.67At1g419303767211transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.67At4g095403770072transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.67At5g282003770776transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.67At3g32050822960unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2014.40.70At3g422203769425transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2014.40.68At2g069803767746transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2014.40.67At5g28820832998unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2014.40.67At3g28170822443unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2014.40.67At1g35150840402-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.H.G.S.X.
0.1912.70.68At3g24270822015APUM25 (Arabidopsis Pumilio 25)F:RNA binding, binding;P:unknown;C:endomembrane system;PO.I.H.G.S.X.
0.1912.70.68At1g36950840604zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.1912.70.68At1g41920840805-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.H.G.S.X.
0.1912.70.68At4g03570825657-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1912.70.69At5g390703771369transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1811.40.67At3g23850821968unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1811.40.67At5g26890832747unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.1811.40.67At2g452303768742transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1811.40.69At5g48080--O.I.H.G.S.X.
0.1710.20.67At1g58390842208disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PBMFOAO.I.H.G.S.X.
0.1710.20.68At1g42710840883-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.1710.20.68At3g423603769446transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1710.20.67At3g437303769601transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1710.20.67At1g77100844045peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.H.G.S.X.
0.1710.20.69At3g43330823412transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1710.20.67At4g09470826531-Encodes a ECA1 gametogenesis related family protein [pseudogene]O.I.H.G.S.X.
0.1710.20.67At2g176103768189transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.168.80.67At5g28620832962protein kinase C-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.168.80.70At4g197803770094transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.168.80.67At4g01820826951PGP3 (P-GLYCOPROTEIN 3)member of MDR subfamilyO.I.H.G.S.X.
0.168.80.68At3g29265822583transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.168.80.67At3g430203769521transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.67At3g256303768933transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.67At1g426903767269transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.68At5g369903771337transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.68At2g106903767864transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.68At1g14800838045-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
49.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.999.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.399.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.499.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.499.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.999.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.699.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.699.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.799.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.499.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.999.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.199.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.199.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.499.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.599.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.199.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.199.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.999.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.099.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.499.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.299.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.999.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.999.7GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
30.799.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.299.7GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
26.799.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.999.7GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
23.299.6GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
21.999.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.999.6GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.899.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.999.4GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
13.899.4GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
13.699.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.599.3GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
11.999.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.599.2GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.099.2GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.299.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.099.1GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.799.0GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0181GO:0006891The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).Link to AmiGO
0.0161GO:0006944The joining of two lipid bilayers to form a single membrane.Link to AmiGO
0.0091GO:0045087Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.014104130SNARE interactions in vesicular transportLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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