CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g14100

Gene name CYP705A13

Module size 5 genes

NF 0.64

%ile 85.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At2g14100 815896 CYP705A13 a member of the cytochrome P450 family O.I. H.G. S.X.
0.89 94.6 0.84 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b O.I. H.G. S.X.
0.60 75.7 0.85 At3g20960 821646 CYP705A33 member of CYP705A O.I. H.G. S.X.
0.60 75.7 0.85 At5g17330 831599 GAD Encodes one of two isoforms of glutamate decarboxylase. O.I. H.G. S.X.
0.38 46.7 0.86 At4g21600 828246 ENDO5 (endonuclease 5) Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops). O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At2g14100	815896	CYP705A13	a member of the cytochrome P450 family	O.I.	H.G.	S.X.
0.89	94.6	0.84	At1g69810	843317	WRKY36	member of WRKY Transcription Factor; Group II-b	O.I.	H.G.	S.X.
0.60	75.7	0.85	At3g20960	821646	CYP705A33	member of CYP705A	O.I.	H.G.	S.X.
0.60	75.7	0.85	At5g17330	831599	GAD	Encodes one of two isoforms of glutamate decarboxylase.	O.I.	H.G.	S.X.
0.38	46.7	0.86	At4g21600	828246	ENDO5 (endonuclease 5)	Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
113.5 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
105.6 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
94.7 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
93.3 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
91.6 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
91.1 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
85.4 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
82.9 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
81.4 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.9 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
80.9 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
73.3 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
73.0 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.9 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
69.7 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.9 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
65.9 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.4 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.6 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
47.6 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.0 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.6 99.8 GSM290756 root - 01% oxygen - 30min - D GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
45.5 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.4 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
44.6 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.8 99.8 GSM290755 root - 01% oxygen - 2h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
41.5 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
39.6 99.8 GSM131237 AtGen_6-0221_Control-Roots-1.0h_Rep1 GSE5620 AtGenExpress: Stress Treatments (Control plants)
34.5 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
31.8 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.2 99.7 GSM290753 root - 01% oxygen - 2h - E GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
29.5 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.5 99.7 GSM290762 root - 04% oxygen - 30min - D GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
24.5 99.6 GSM290760 root - 04% oxygen - 2h - D GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
20.4 99.6 GSM75514 Col-0 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
20.4 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.1 99.6 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
18.9 99.5 GSM75510 Col-0 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
18.8 99.5 GSM206277 Wild type, water treatment, biological rep1 GSE8319 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
18.2 99.5 GSM206278 Wild type, water treatment, biological rep2 GSE8319 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
16.3 99.5 GSM245477 2 hr Hypoxia Stress Total RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
14.3 99.4 GSM245482 2 hr Hypoxia Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
14.1 99.4 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
13.3 99.4 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
12.9 99.3 GSM131294 AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
11.3 99.3 GSM206279 Wild type, water treatment, biological rep3 GSE8319 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
11.1 99.2 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
10.6 99.2 GSM206285 Chitin receptor mutant, water treatment, biological rep3 GSE8319 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
9.3 99.1 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
9.3 99.1 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
9.3 99.1 GSM131238 AtGen_6-0222_Control-Roots-1.0h_Rep2 GSE5620 AtGenExpress: Stress Treatments (Control plants)
9.1 99.1 GSM131346 AtGen_6-4322_Droughtstress-Roots-3.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
8.9 99.0 GSM206283 Chitin receptor mutant, water treatment, biological rep1 GSE8319 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
113.5	99.9	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
105.6	99.9	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
94.7	99.9	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
93.3	99.9	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
91.6	99.9	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
91.1	99.9	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
85.4	99.9	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
82.9	99.9	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
81.4	99.9	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.9	99.9	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
80.9	99.9	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
73.3	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
73.0	99.9	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.9	99.9	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
69.7	99.9	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.9	99.9	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
65.9	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.4	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.6	99.8	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
47.6	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.0	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.6	99.8	GSM290756	root - 01% oxygen - 30min - D	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
45.5	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.4	99.8	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
44.6	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.8	99.8	GSM290755	root - 01% oxygen - 2h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
41.5	99.8	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
39.6	99.8	GSM131237	AtGen_6-0221_Control-Roots-1.0h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
34.5	99.7	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
31.8	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.2	99.7	GSM290753	root - 01% oxygen - 2h - E	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
29.5	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.5	99.7	GSM290762	root - 04% oxygen - 30min - D	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
24.5	99.6	GSM290760	root - 04% oxygen - 2h - D	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
20.4	99.6	GSM75514	Col-0 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
20.4	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
20.1	99.6	GSM184922	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
18.9	99.5	GSM75510	Col-0 6h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
18.8	99.5	GSM206277	Wild type, water treatment, biological rep1	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
18.2	99.5	GSM206278	Wild type, water treatment, biological rep2	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
16.3	99.5	GSM245477	2 hr Hypoxia Stress Total RNA Rep 2	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
14.3	99.4	GSM245482	2 hr Hypoxia Stress IP RNA Rep 2	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
14.1	99.4	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
13.3	99.4	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
12.9	99.3	GSM131294	AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
11.3	99.3	GSM206279	Wild type, water treatment, biological rep3	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
11.1	99.2	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
10.6	99.2	GSM206285	Chitin receptor mutant, water treatment, biological rep3	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
9.3	99.1	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
9.3	99.1	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
9.3	99.1	GSM131238	AtGen_6-0222_Control-Roots-1.0h_Rep2	GSE5620	AtGenExpress: Stress Treatments (Control plants)
9.1	99.1	GSM131346	AtGen_6-4322_Droughtstress-Roots-3.0h_Rep2	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
8.9	99.0	GSM206283	Chitin receptor mutant, water treatment, biological rep1	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 1 GO:0006308 The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.200	1	GO:0006308	The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.222 1 00430 Taurine and hypotaurine metabolism
0.091 1 00410 beta-Alanine metabolism
0.074 1 00650 Butanoate metabolism

SF	Genes	KEGG ID	Pathway name
0.222	1	00430	Taurine and hypotaurine metabolism
0.091	1	00410	beta-Alanine metabolism
0.074	1	00650	Butanoate metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g14100
Gene name	CYP705A13
Module size	5 genes
NF	0.64
%ile	85.1

Co-expression analysis

Gene ID At2g14100 Gene name CYP705A13 Module size 5 genes NF 0.64 %ile 85.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.222100430Taurine and hypotaurine metabolism0.091100410beta-Alanine metabolism0.074100650Butanoate metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g14100

Gene name CYP705A13

Module size 5 genes

NF 0.64

%ile 85.1

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.222 1 00430 Taurine and hypotaurine metabolism
0.091 1 00410 beta-Alanine metabolism
0.074 1 00650 Butanoate metabolism

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays