Co-expression analysis

Gene ID At2g14060
Gene name S-adenosyl-L-methionine:carboxyl methyltransferase family protein
Module size 65 genes
NF 0.32
%ile 41.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g14060815891S-adenosyl-L-methionine:carboxyl methyltransferase family proteinencodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)O.I.H.G.S.X.
0.5974.70.74At4g01190828066ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10)Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems.O.I.H.G.S.X.
0.5974.70.72At3g02590820687delta 7-sterol-C5-desaturase, putativeF:oxidoreductase activity, C-5 sterol desaturase activity, iron ion binding;P:oxidation reduction, sterol biosynthetic process, fatty acid biosynthetic process;C:endoplasmic reticulum;OBFMPO.I.H.G.S.X.
0.5974.70.73At1g11560837699OST3/OST6 family proteinF:oligosaccharide transmembrane transporter activity;P:biological_process unknown;C:endomembrane system;MPFOO.I.H.G.S.X.
0.5873.80.73At2g31050817657plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POAO.I.H.G.S.X.
0.5570.60.74At1g10890837632unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.H.G.S.X.
0.5469.50.73At4g31710829299ATGLR2.4member of Putative ligand-gated ion channel subunit familyO.I.H.G.S.X.
0.5469.50.73At5g66260836758auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.H.G.S.X.
0.5368.60.74At5g44850834515-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.
0.5267.40.74At2g35460818111harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5267.40.73At2g24255816960-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5166.30.73At1g56270842080unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5166.30.75At5g55370835630long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.H.G.S.X.
0.5166.30.73At1g64070842711RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1)Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.O.I.H.G.S.X.
0.5166.30.73At3g19140821448protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVO.I.H.G.S.X.
0.5166.30.72At5g52975835376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5065.30.73At5g11050830972MYB64 (myb domain protein 64)Member of R2R3-MYB transcription factor gene family.O.I.H.G.S.X.
0.5065.30.74At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBO.I.H.G.S.X.
0.5065.30.73At5g12240831099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5065.30.74At5g55780835672DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMFOO.I.H.G.S.X.
0.4963.50.73At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBO.I.H.G.S.X.
0.4963.50.73At5g66220836754chalcone isomeraseF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:unknown;PO.I.H.G.S.X.
0.4862.50.72At2g38100818388proton-dependent oligopeptide transport (POT) family proteinF:uracil transmembrane transporter activity, amino acid transmembrane transporter activity;P:oligopeptide transport;C:endomembrane system, membrane;PBMOFO.I.H.G.S.X.
0.4862.50.73At1g49260841350-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4862.50.74At4g05260825874ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;POO.I.H.G.S.X.
0.4862.50.75At3g15910820834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4862.50.73At3g20700821617F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4761.20.73At4g38880830043ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3)GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2O.I.H.G.S.X.
0.4761.20.73At1g41810840789transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.73At3g43900823506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4659.80.72At5g52460835322EDA41 (embryo sac development arrest 41)F:unknown;P:polar nucleus fusion;C:cellular_component unknown;PO.I.H.G.S.X.
0.4659.80.72At1g57830842158Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO.I.H.G.S.X.
0.4558.30.72At1g34440840347unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.20.73At1g55580842007LAS (Lateral Suppressor)Encodes a member of the GRAS family of putative transcriptional regulators. It is involved in the initiation of axillary meristems during both the vegetative and reproductive growth phases and functions upstream of REV and AXR1 in the regulation of shoot branching.O.I.H.G.S.X.
0.4457.20.72At2g01960814727TET14 (TETRASPANIN14)Member of TETRASPANIN familyO.I.H.G.S.X.
0.4457.20.72At5g22680832331-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4457.20.72At3g13140820502hydroxyproline-rich glycoprotein family proteinF:unknown;P:unknown;C:cellular_component unknown;PFMBOO.I.H.G.S.X.
0.4457.20.73At3g18840821417--O.I.H.G.S.X.
0.4355.30.73At3g14030820617-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4355.30.73At1g2229083883614-3-3 protein GF14, putative (GRF10)F:protein phosphorylated amino acid binding;P:unknown;C:unknown;MPOFO.I.H.G.S.X.
0.4355.30.73At3g32260822997-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4355.30.72At5g25860832655F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;PO.I.H.G.S.X.
0.4355.30.73At1g28220839716ATPUP3Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.H.G.S.X.
0.4253.90.72At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)O.I.H.G.S.X.
0.4253.90.73At5g48420834897unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.90.73At4g14590827107emb2739 (embryo defective 2739)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.4253.90.73At1g75470843883ATPUP15Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.H.G.S.X.
0.4152.40.72At3g42820823326transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.73At2g261352745561zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:membrane;MFOPVO.I.H.G.S.X.
0.3846.70.72At5g40050834002F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.3643.60.73At1g50350841457-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3541.60.73At5g24980832568unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3439.80.73At4g29560829077unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.3133.80.73At2g44030819008kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMBOFAVO.I.H.G.S.X.
0.3032.10.72At3g49820824144unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2930.30.73At1g63730842677disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response;C:intrinsic to membrane;PMBOAFO.I.H.G.S.X.
0.2930.30.73At3g06600819839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2830.30.72At3g45460823686zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.2115.80.79At4g02700828201SULTR3F:sulfate transmembrane transporter activity;P:sulfate transport, transport;C:integral to membrane, membrane;BOMPFAO.I.H.G.S.X.
0.2115.80.73At2g47820819394unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVO.I.H.G.S.X.
0.2014.40.74At2g33760817942pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.1710.20.73At2g24800817017peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.H.G.S.X.
0.1710.20.73At3g54510824616early-responsive to dehydration protein-related / ERD protein-relatedF:unknown;P:unknown;C:endomembrane system, membrane;FPMOO.I.H.G.S.X.
0.146.80.73At5g52230835299MBD13Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.O.I.H.G.S.X.
0.020.40.74At1g80570844396F-box family protein (FBL14)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MPOFBVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
76.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
42.199.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.699.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.399.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
38.599.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.099.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.699.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.599.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.299.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.899.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.399.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.999.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.699.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.399.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.099.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.799.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.599.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.399.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
32.099.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.199.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.699.7GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
27.399.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.199.7GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
24.999.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.099.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.999.6GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
23.499.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.199.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.599.6GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.799.3GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.899.2GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.399.2GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.399.1GSM218590Protoplasted root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.399.1GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.199.1GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.199.1GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
8.999.0GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0462GO:0006863The directed movement of purines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells.Link to AmiGO
0.0332GO:0006633The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.Link to AmiGO
0.0291GO:0009113The chemical reactions and pathways resulting in the formation of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.025100941Flavonoid biosynthesisLink to KEGG PATHWAY
0.020100562Inositol phosphate metabolismLink to KEGG PATHWAY
0.020104070Phosphatidylinositol signaling systemLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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