Co-expression analysis

Gene ID At2g11165
Gene name transposable element gene
Module size 7 genes
NF 0.69
%ile 88.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7184.21.00At2g111653768074transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.9296.00.90At3g308463769163transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8391.40.89At5g28950833021unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.6781.60.88At1g29480839825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPO.I.H.G.S.X.
0.6378.10.93At5g34895833430transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.89At1g36670840575transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.90At3g47270823880transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.O.I.H.G.S.X.Other DB
0.6176.70.84At4g07450826178transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.86At2g28755817425UDP-D-glucuronate carboxy-lyase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFAO.I.H.G.S.X.
0.5974.70.80At2g04063814941glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMBOO.I.H.G.S.X.
0.5773.80.82At2g15450816037glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.H.G.S.X.
0.5673.00.78At2g022103767940transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.85At5g46440834687-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5065.30.88At2g022003768149transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.84At1g66790842997unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5065.30.79At2g138903768362transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.78At5g37420833718AGL105F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.H.G.S.X.
0.4761.20.80At2g111503768073transposable element genepseudogene of putative replication protein A1O.I.H.G.S.X.
0.4659.80.85At1g48800841302terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.H.G.S.X.
0.4457.20.75At2g06390815197transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.67At2g16040816101hAT dimerisation domain-containing protein / transposase-relatedF:protein dimerization activity;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.4457.20.78At1g32840840178transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.88At3g31910822931-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMFO.I.H.G.S.X.
0.4152.40.88At1g54430841885transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.89At3g30450822756transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.85At3g30200822713-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.80.83At3g04390819594xanthine dehydrogenase family proteinF:electron carrier activity, oxidoreductase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;MOBFPO.I.H.G.S.X.
0.3846.70.85At3g30730822811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3846.70.78At4g11745826780kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAO.I.H.G.S.X.
0.3745.00.76At3g32900823050transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.60.82At3g61720825345C2 domain-containing proteinF:unknown;P:tryptophan biosynthetic process;C:unknown;PMOFO.I.H.G.S.X.
0.3643.60.73At2g14130815899transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3541.60.82At5g304403770957transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3541.60.79At1g68420843171asparaginyl-tRNA synthetase-relatedF:nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.H.G.S.X.
0.3338.10.86At4g05580825912transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.83At4g15710827248unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3133.80.81At1g35663840469transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.80At5g49640835026unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2930.30.79At4g15870827268ATTS1encodes a putative terpene synthaseO.I.H.G.S.X.
0.2930.30.76At1g17390838311transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2726.20.81At2g13960815880myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:chloroplast;OMPFVO.I.H.G.S.X.
0.2726.20.74At5g34900833431transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2726.20.71At1g10420--O.I.H.G.S.X.
0.2726.20.70At4g08190826369Ras-related GTP-binding protein, putativeF:GTP binding;P:small GTPase mediated signal transduction;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.2624.40.84At5g352403771259transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2624.40.74At5g35880833574transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2522.60.85At5g26890832747unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.2522.60.75At3g43160823389MEE38 (maternal effect embryo arrest 38)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;OPFO.I.H.G.S.X.
0.2522.60.74At3g20760821624-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOBO.I.H.G.S.X.
0.2522.60.84At4g08140826362-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
66.799.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
56.499.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
42.899.8E-MEXP-1443-raw-cel-1581869515
41.799.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
27.499.7E-MEXP-1443-raw-cel-1581869745
27.399.7E-MEXP-1443-raw-cel-1581869803
20.599.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.199.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.899.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.799.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.999.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.999.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.699.5E-MEXP-449-raw-cel-676423362
18.299.5E-MEXP-98-raw-cel-320188914
17.999.5GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.699.5GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.499.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.399.5GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.099.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.399.5GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.199.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.599.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.299.4GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.299.4GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.099.4GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.499.4GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.499.4GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.299.4GSM184910Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.299.4GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.499.3GSM134316Penfield_1-18_embryo-PAC_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
11.099.2GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.999.2GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.199.2E-MEXP-1725-raw-cel-1669614634
10.099.2GSM74904ice1_3H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
8.999.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage