Co-expression analysis

Gene ID At2g10050
Gene name transposable element gene
Module size 34 genes
NF 0.70
%ile 89.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7888.61.00At2g10050815462transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8592.40.97At1g43970840996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.8190.40.97At4g045603769781transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8190.40.96At2g198403768331transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8089.80.97At3g42120823184transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.97At1g325903766881transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.96At4g077503769978transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.97At2g14570815944transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7888.60.98At2g139303768460transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7788.00.96At3g28870822521-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.7788.00.97At1g366003767017transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.96At2g214603768354transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.96At2g075103768270transposable element genepseudogene of Ulp1 protease family proteinO.I.H.G.S.X.
0.7687.40.97At2g14590815946transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.98At1g478163767392transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.97At5g358203771306transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.96At1g672403767657transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.96At4g045903770515transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.97At2g109003768617transposable element genesimilarity to non-LTR retroelement proteinO.I.H.G.S.X.
0.6982.90.96At2g143503768589transposable element genepseudogene of unknown proteinO.I.H.G.S.X.
0.6882.20.96At3g455203769652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.96At3g27980822422pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFMO.I.H.G.S.X.
0.6680.10.97At2g07740815421transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.97At3g27800822400-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6478.90.97At3g442703769630transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.96At4g089703769794transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.97At1g37080840625transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.96At2g13270815813transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.97At2g149503768119transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.96At1g359953766969transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.96At2g073303767907transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.97At2g07505815323unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5570.60.96At2g149303768116transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.96At2g059603768174transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
75.699.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
44.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.399.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.099.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.999.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.799.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.399.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.999.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.299.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.599.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.499.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.899.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.399.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.399.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.599.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.899.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.399.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.099.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.499.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.499.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
21.199.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.999.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
19.099.5GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.599.5GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.599.4GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.499.4GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.199.4GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.599.4GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.399.2GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.299.2GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination StudyLink to GEO
10.199.2GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
9.199.1GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0211GO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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