Co-expression analysis

Gene ID At2g07630
Gene name transposable element gene
Module size 85 genes
NF 0.53
%ile 74.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g07630815335transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8391.40.92At5g28420832929unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.7184.20.91At2g213103768520transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.90At4g037203769891transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.90At1g364303766999transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.89At3g30820822850unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVO.I.H.G.S.X.
0.6680.10.90At1g47940841212-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6680.10.90At4g045503770307transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.89At2g07020815272protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:unknown;MPOBFVAO.I.H.G.S.X.
0.6478.90.89At1g36095840514-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.6378.10.89At3g284003768972transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.89At3g29750822661ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide bindingF:aspartic-type endopeptidase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:proteolysis, translation, tRNA aminoacylation for protein translation;C:cytoplasm;PO.I.H.G.S.X.
0.6277.30.89At3g422703769438transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.90At4g041703770474transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.88At2g075003768136transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.90At2g41570818755transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.90At1g312103766867transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.90At3g31940822936transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.90At3g254503768929transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.89At5g07640830657zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFO.I.H.G.S.X.
0.5873.80.88At5g28410832927unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.5873.80.89At2g015503768052transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.89At3g303303769073transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.91At2g34110817972-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5773.80.89At2g07760815423zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.H.G.S.X.
0.5773.80.89At1g439303767331transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.90At2g124203768687transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.88At4g09700826556transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.89At5g208003770713transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.89At4g07380826169unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.H.G.S.X.
0.5673.00.89At2g14700815958unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5673.00.89At3g31950822938-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.5673.00.88At1g42460840850transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.90At2g064103767943transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.89At4g014903770430transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.90At4g104603770326transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.90At3g29080822555unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.5469.50.90At1g526103767445transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.88At1g359953766969transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.90At3g42680823288transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.89At5g27800832842ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingF:nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;PO.I.H.G.S.X.
0.5368.60.88At1g34610840365transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.89At3g455203769652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.89At3g30320822732unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5368.60.89At3g13270820526transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.89At3g42300823220transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.89At2g063103768228transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.90At1g624603767610transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.89At4g089703769794transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.88At3g42110823182transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.88At4g080903770060transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.88At1g353803766941transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.89At1g42680840876myosin-relatedF:motor activity, ATP binding;P:biological_process unknown;C:myosin complex;MOFPO.I.H.G.S.X.
0.5166.30.88At2g129903768598transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.90At2g198403768331transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.89At2g07505815323unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5166.30.88At2g139303768460transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.88At1g43970840996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.4963.50.89At1g325903766881transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.88At2g10090815466transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.88At1g366003767017transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.88At4g077503769978transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.88At2g018403768258transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.88At3g313603769181transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.88At1g360403766972transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.88At2g149503768119transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.89At2g073303767907transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.88At3g27800822400-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4659.80.88At1g35860840488TOC75-I (translocon outer membrane complex 75-I)TOC75 pseudogene due to a 5.4-kb gypsy/Ty3-related retrotransposon inserted at the 5' end of the geneO.I.H.G.S.X.
0.4659.80.88At2g14570815944transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.88At1g478163767392transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.88At2g185803768275transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.89At2g13270815813transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.89At2g415803768726transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.89At2g076503767967transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.88At4g05080825852F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.20.89At1g375373767073transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.89At3g442703769630transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.88At2g074203767927transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.89At5g29050833041unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4152.40.88At2g21680816706-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.
0.4152.40.90At2g12610815735transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.88At1g27870839680nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.4050.80.88At1g576403767555transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.88At2g130203768601transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.999.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
51.299.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.699.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
49.599.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.999.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.699.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.799.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.599.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.999.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.499.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.299.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.599.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.999.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.699.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.599.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.499.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.099.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.899.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
37.299.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.899.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.299.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
30.599.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.499.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
28.399.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
27.199.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.499.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.899.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.599.4GSM128753De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
13.299.4GSM133771Lindsey_1-23_torpedo-apical_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
13.199.4GSM128756De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
12.399.3E-MEXP-1443-raw-cel-1581869573
9.999.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.299.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0312GO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.Link to AmiGO
0.0111GO:0006950A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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