Co-expression analysis

Gene ID At2g06220
Gene name transposable element gene
Module size 75 genes
NF 0.59
%ile 81.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9195.61.00At2g062203768629transposable element genepseudogene of unknown proteinO.I.H.G.S.X.
0.8089.80.93At2g047603767977transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.93At4g044403769954transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.93At1g364403767000transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7888.60.92At3g55930824759RNA splicing factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.H.G.S.X.
0.7788.00.93At3g29660822644transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.92At3g308003769137transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.93At2g29610817511-pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domainO.I.H.G.S.X.
0.7687.40.93At2g07770815424transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.92At1g35110840395transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.93At2g076203767903transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7486.10.91At5g303803770931transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7486.10.93At5g26020832671transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.92At2g06120815168transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.92At1g360353766971transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.92At3g30845822868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7184.20.92At2g07672815344unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7184.20.91At3g43530823445transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.92At2g143203768070transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.91At2g144203768298transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.92At5g54480835536unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVAO.I.H.G.S.X.
0.6982.90.91At3g42130823185glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVO.I.H.G.S.X.
0.6982.90.93At1g43320840933unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6982.90.93At1g778203767718transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.92At1g437453767315transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.92At2g29770817527kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOAO.I.H.G.S.X.
0.6781.60.91At1g43660840950transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.93At3g32120822975unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6680.10.92At2g106503767860transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.92At3g29640822637transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.91At3g30660822783transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.92At2g056603768558transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.91At2g116903767823transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.92At2g150603767889transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.92At1g29620839839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6579.60.92At2g077303768192transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.91At2g073953768424transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.91At5g353403771268transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.93At3g296503769022transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.91At2g07692815368unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6478.90.92At2g115903768652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.92At4g23780828478unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBVO.I.H.G.S.X.
0.6277.30.91At1g35820840484unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6176.70.93At2g063303768229transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.92At2g157003767804transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.92At2g127103768564transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.91At1g36020840505-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5974.70.93At1g44478841030-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.5873.80.91At4g213603770133transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.92At3g42160823189pectinesterase-relatedF:pectinesterase activity;P:cell wall modification;C:cell wall;PO.I.H.G.S.X.
0.5570.60.93At2g064903768412transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.92At1g301503766846transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.94At1g338133766903transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.93At1g362703766988transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.93At3g30610822776transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.92At2g106103767758transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.92At2g10390815498transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.93At2g130203768601transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.92At3g440303769618-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.93At3g22140--O.I.H.G.S.X.
0.4761.20.91At2g055503768218transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.92At3g430203769521transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.91At5g03400831849unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.
0.4659.80.93At5g34870833422zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.4659.80.93At1g357603766961transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.91At2g40955818695unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBO.I.H.G.S.X.
0.4558.30.92At1g433003767304transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.93At2g29605817510unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.4355.30.92At2g058203768385transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.91At3g313403769175transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.91At1g303903766850transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.91At3g24260822014-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMABFO.I.H.G.S.X.
0.3948.40.91At2g061303767896transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3948.40.93At3g30490822762transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.91At5g348003771185transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.599.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
47.499.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.799.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.799.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.399.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.699.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.799.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.199.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.599.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.499.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.399.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.699.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.199.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.899.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.699.7GSM133781Lindsey_1-6_globular-basal_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
28.099.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.499.6GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
24.999.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
24.399.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.299.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.199.6GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
14.499.4GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.599.3GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
11.499.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.499.3E-MEXP-807-raw-cel-1173273060
11.499.3GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.799.2GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.099.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.899.1GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
8.699.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
8.699.0E-MEXP-807-raw-cel-1173273170
8.699.0E-MEXP-807-raw-cel-1173273223

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0141GO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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