CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g06220

Gene name transposable element gene

Module size 75 genes

NF 0.59

%ile 81.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.91 95.6 1.00 At2g06220 3768629 transposable element gene pseudogene of unknown protein O.I. H.G. S.X.
0.80 89.8 0.93 At2g04760 3767977 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.79 89.1 0.93 At4g04440 3769954 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.79 89.1 0.93 At1g36440 3767000 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.78 88.6 0.92 At3g55930 824759 RNA splicing factor-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB O.I. H.G. S.X.
0.77 88.0 0.93 At3g29660 822644 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.76 87.4 0.92 At3g30800 3769137 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.76 87.4 0.93 At2g29610 817511 - pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domain O.I. H.G. S.X.
0.76 87.4 0.93 At2g07770 815424 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.75 86.9 0.92 At1g35110 840395 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.75 86.9 0.93 At2g07620 3767903 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.74 86.1 0.91 At5g30380 3770931 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.74 86.1 0.93 At5g26020 832671 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.73 85.5 0.92 At2g06120 815168 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.72 84.8 0.92 At1g36035 3766971 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.72 84.8 0.92 At3g30845 822868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.71 84.2 0.92 At2g07672 815344 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.71 84.2 0.91 At3g43530 823445 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.70 83.5 0.92 At2g14320 3768070 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.70 83.5 0.91 At2g14420 3768298 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.70 83.5 0.92 At5g54480 835536 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVA O.I. H.G. S.X.
0.69 82.9 0.91 At3g42130 823185 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFV O.I. H.G. S.X.
0.69 82.9 0.93 At1g43320 840933 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.69 82.9 0.93 At1g77820 3767718 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.68 82.2 0.92 At1g43745 3767315 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.68 82.2 0.92 At2g29770 817527 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOA O.I. H.G. S.X.
0.67 81.6 0.91 At1g43660 840950 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.67 81.6 0.93 At3g32120 822975 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.66 80.1 0.92 At2g10650 3767860 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.92 At3g29640 822637 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.91 At3g30660 822783 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.92 At2g05660 3768558 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.91 At2g11690 3767823 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.92 At2g15060 3767889 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.65 79.6 0.92 At1g29620 839839 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.65 79.6 0.92 At2g07730 3768192 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.65 79.6 0.91 At2g07395 3768424 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.65 79.6 0.91 At5g35340 3771268 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.64 78.9 0.93 At3g29650 3769022 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.64 78.9 0.91 At2g07692 815368 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.64 78.9 0.92 At2g11590 3768652 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.63 78.1 0.92 At4g23780 828478 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBV O.I. H.G. S.X.
0.62 77.3 0.91 At1g35820 840484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.61 76.7 0.93 At2g06330 3768229 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.60 75.7 0.92 At2g15700 3767804 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.59 74.7 0.92 At2g12710 3768564 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.59 74.7 0.91 At1g36020 840505 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.59 74.7 0.93 At1g44478 841030 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.58 73.8 0.91 At4g21360 3770133 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.57 73.8 0.92 At3g42160 823189 pectinesterase-related F:pectinesterase activity;P:cell wall modification;C:cell wall;P O.I. H.G. S.X.
0.55 70.6 0.93 At2g06490 3768412 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.55 70.6 0.92 At1g30150 3766846 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.55 70.6 0.94 At1g33813 3766903 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.54 69.5 0.93 At1g36270 3766988 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.53 68.6 0.93 At3g30610 822776 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.53 68.6 0.92 At2g10610 3767758 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.52 67.4 0.92 At2g10390 815498 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.52 67.4 0.93 At2g13020 3768601 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.92 At3g44030 3769618 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.93 At3g22140 - - O.I. H.G. S.X.
0.47 61.2 0.91 At2g05550 3768218 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 0.92 At3g43020 3769521 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 0.91 At5g03400 831849 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP O.I. H.G. S.X.
0.46 59.8 0.93 At5g34870 833422 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PO O.I. H.G. S.X.
0.46 59.8 0.93 At1g35760 3766961 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.45 58.3 0.91 At2g40955 818695 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPB O.I. H.G. S.X.
0.45 58.3 0.92 At1g43300 3767304 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.45 58.3 0.93 At2g29605 817510 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB O.I. H.G. S.X.
0.43 55.3 0.92 At2g05820 3768385 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.42 53.9 0.91 At3g31340 3769175 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.42 53.9 0.91 At1g30390 3766850 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.40 50.8 0.91 At3g24260 822014 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMABF O.I. H.G. S.X.
0.39 48.4 0.91 At2g06130 3767896 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.39 48.4 0.93 At3g30490 822762 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.34 39.8 0.91 At5g34800 3771185 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.91	95.6	1.00	At2g06220	3768629	transposable element gene	pseudogene of unknown protein	O.I.	H.G.	S.X.
0.80	89.8	0.93	At2g04760	3767977	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.79	89.1	0.93	At4g04440	3769954	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.79	89.1	0.93	At1g36440	3767000	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.78	88.6	0.92	At3g55930	824759	RNA splicing factor-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB	O.I.	H.G.	S.X.
0.77	88.0	0.93	At3g29660	822644	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.76	87.4	0.92	At3g30800	3769137	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.76	87.4	0.93	At2g29610	817511	-	pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domain	O.I.	H.G.	S.X.
0.76	87.4	0.93	At2g07770	815424	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.75	86.9	0.92	At1g35110	840395	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.75	86.9	0.93	At2g07620	3767903	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.74	86.1	0.91	At5g30380	3770931	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.74	86.1	0.93	At5g26020	832671	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.73	85.5	0.92	At2g06120	815168	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.72	84.8	0.92	At1g36035	3766971	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.72	84.8	0.92	At3g30845	822868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.71	84.2	0.92	At2g07672	815344	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.71	84.2	0.91	At3g43530	823445	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.70	83.5	0.92	At2g14320	3768070	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.70	83.5	0.91	At2g14420	3768298	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.70	83.5	0.92	At5g54480	835536	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVA	O.I.	H.G.	S.X.
0.69	82.9	0.91	At3g42130	823185	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFV	O.I.	H.G.	S.X.
0.69	82.9	0.93	At1g43320	840933	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.69	82.9	0.93	At1g77820	3767718	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.68	82.2	0.92	At1g43745	3767315	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.68	82.2	0.92	At2g29770	817527	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOA	O.I.	H.G.	S.X.
0.67	81.6	0.91	At1g43660	840950	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.67	81.6	0.93	At3g32120	822975	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.66	80.1	0.92	At2g10650	3767860	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.92	At3g29640	822637	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.91	At3g30660	822783	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.92	At2g05660	3768558	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.91	At2g11690	3767823	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.92	At2g15060	3767889	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.65	79.6	0.92	At1g29620	839839	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.65	79.6	0.92	At2g07730	3768192	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.65	79.6	0.91	At2g07395	3768424	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.65	79.6	0.91	At5g35340	3771268	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.64	78.9	0.93	At3g29650	3769022	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.64	78.9	0.91	At2g07692	815368	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.64	78.9	0.92	At2g11590	3768652	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.63	78.1	0.92	At4g23780	828478	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBV	O.I.	H.G.	S.X.
0.62	77.3	0.91	At1g35820	840484	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.61	76.7	0.93	At2g06330	3768229	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.60	75.7	0.92	At2g15700	3767804	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.59	74.7	0.92	At2g12710	3768564	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.59	74.7	0.91	At1g36020	840505	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.59	74.7	0.93	At1g44478	841030	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	H.G.	S.X.
0.58	73.8	0.91	At4g21360	3770133	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.57	73.8	0.92	At3g42160	823189	pectinesterase-related	F:pectinesterase activity;P:cell wall modification;C:cell wall;P	O.I.	H.G.	S.X.
0.55	70.6	0.93	At2g06490	3768412	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.55	70.6	0.92	At1g30150	3766846	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.55	70.6	0.94	At1g33813	3766903	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.54	69.5	0.93	At1g36270	3766988	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.93	At3g30610	822776	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.92	At2g10610	3767758	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.52	67.4	0.92	At2g10390	815498	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.52	67.4	0.93	At2g13020	3768601	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	0.92	At3g44030	3769618	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	0.93	At3g22140		-	-	O.I.	H.G.	S.X.
0.47	61.2	0.91	At2g05550	3768218	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	0.92	At3g43020	3769521	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	0.91	At5g03400	831849	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP	O.I.	H.G.	S.X.
0.46	59.8	0.93	At5g34870	833422	zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PO	O.I.	H.G.	S.X.
0.46	59.8	0.93	At1g35760	3766961	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.45	58.3	0.91	At2g40955	818695	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPB	O.I.	H.G.	S.X.
0.45	58.3	0.92	At1g43300	3767304	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.45	58.3	0.93	At2g29605	817510	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB	O.I.	H.G.	S.X.
0.43	55.3	0.92	At2g05820	3768385	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.42	53.9	0.91	At3g31340	3769175	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.42	53.9	0.91	At1g30390	3766850	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.40	50.8	0.91	At3g24260	822014	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMABF	O.I.	H.G.	S.X.
0.39	48.4	0.91	At2g06130	3767896	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.39	48.4	0.93	At3g30490	822762	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.34	39.8	0.91	At5g34800	3771185	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.5 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
47.4 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.2 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.7 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.7 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.7 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.3 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.1 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.6 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.7 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.2 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.1 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.5 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.4 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.8 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.6 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.1 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.8 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.6 99.7 GSM133781 Lindsey_1-6_globular-basal_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.0 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.4 99.6 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
24.9 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.3 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
21.2 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.1 99.6 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
14.4 99.4 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
12.5 99.3 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
11.4 99.3 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.4 99.3 E-MEXP-807-raw-cel-1173273060
11.4 99.3 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.7 99.2 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.0 99.2 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.8 99.1 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
8.6 99.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.6 99.0 E-MEXP-807-raw-cel-1173273170
8.6 99.0 E-MEXP-807-raw-cel-1173273223

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
54.5	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
47.4	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.2	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.7	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.7	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.7	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.3	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.1	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.6	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.7	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.2	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.1	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.5	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.4	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.3	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.8	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.6	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.1	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.8	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
30.6	99.7	GSM133781	Lindsey_1-6_globular-basal_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.0	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.4	99.6	GSM311276	Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
24.9	99.6	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.3	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
21.2	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.1	99.6	GSM311275	Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
14.4	99.4	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
12.5	99.3	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
11.4	99.3	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.4	99.3	E-MEXP-807-raw-cel-1173273060
11.4	99.3	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.7	99.2	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.0	99.2	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.8	99.1	GSM142738	DH001_ATH1_A5-BCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
8.6	99.0	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.6	99.0	E-MEXP-807-raw-cel-1173273170
8.6	99.0	E-MEXP-807-raw-cel-1173273223

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.014 1 GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.014	1	GO:0042545	The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g06220
Gene name	transposable element gene
Module size	75 genes
NF	0.59
%ile	81.0

Co-expression analysis

Gene ID At2g06220 Gene name transposable element gene Module size 75 genes NF 0.59 %ile 81.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0141GO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g06220

Gene name transposable element gene

Module size 75 genes

NF 0.59

%ile 81.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.014 1 GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays