CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g06180

Gene name transposable element gene

Module size 6 genes

NF 0.70

%ile 88.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.71 84.2 1.00 At2g06180 3768579 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.91 95.6 0.98 At2g12520 815726 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.77 88.0 0.97 At1g48290 841249 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.67 81.6 0.97 At3g07380 819926 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.60 75.7 0.97 At4g08820 826453 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.97 At2g13550 815841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOP O.I. H.G. S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.1 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.8 99.5 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.4 99.5 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
15.5 99.5 E-MEXP-509-raw-cel-829148597
14.0 99.4 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.0 99.4 E-MEXP-509-raw-cel-829148772
12.7 99.3 E-MEXP-1094-raw-cel-1379507313
11.8 99.3 E-MEXP-509-raw-cel-829148632
11.4 99.3 E-MEXP-509-raw-cel-829148561
11.2 99.2 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.1 99.2 E-MEXP-509-raw-cel-829148738
10.8 99.2 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.8 99.2 E-MEXP-509-raw-cel-829148525
10.5 99.2 E-MEXP-509-raw-cel-829148492
10.2 99.2 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.4 99.1 E-MEXP-509-raw-cel-829148385
9.2 99.1 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.1 99.1 E-MEXP-509-raw-cel-829148420

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage