Co-expression analysis

Gene ID At2g06180
Gene name transposable element gene
Module size 6 genes
NF 0.70
%ile 88.6



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7184.21.00At2g061803768579transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.9195.60.98At2g12520815726transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7788.00.97At1g48290841249transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.97At3g07380819926unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6075.70.97At4g08820826453transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.97At2g13550815841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.199.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.899.5GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.499.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
15.599.5E-MEXP-509-raw-cel-829148597
14.099.4GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
13.099.4E-MEXP-509-raw-cel-829148772
12.799.3E-MEXP-1094-raw-cel-1379507313
11.899.3E-MEXP-509-raw-cel-829148632
11.499.3E-MEXP-509-raw-cel-829148561
11.299.2GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.199.2E-MEXP-509-raw-cel-829148738
10.899.2GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.899.2E-MEXP-509-raw-cel-829148525
10.599.2E-MEXP-509-raw-cel-829148492
10.299.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.499.1E-MEXP-509-raw-cel-829148385
9.299.1GSM265433Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
9.199.1E-MEXP-509-raw-cel-829148420

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage