Co-expression analysis

Gene ID At2g05450
Gene name transposable element gene
Module size 71 genes
NF 0.30
%ile 37.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g054503768432transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.73At1g58265842195cytochrome P450-relatedF:electron carrier activity, monooxygenase activity, iron ion binding, heme binding;P:biological_process unknown;C:cellular_component unknown;PMFBOO.I.H.G.S.X.
0.5166.30.69At4g03640825664transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.71At5g288703770841transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.66At2g155103768657transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.67At5g29020833029transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.66At3g422603769437transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.68At2g21040816638C2 domain-containing proteinC2 domain-containing protein. Possible pseudogene of AT2G20990.O.I.H.G.S.X.
0.4558.30.68At2g139403768461transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.66At3g28170822443unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4558.30.67At4g07500826197transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.68At4g14170827057pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.4457.20.70At1g47770841189beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.H.G.S.X.
0.4355.30.67At5g332603771121transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.66At2g173303768013-putative obtusifoliol 14-alpha demethylase. Expressed pseudogene.O.I.H.G.S.X.
0.4253.90.69At2g07240815294cysteine-type peptidaseF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POFMBVO.I.H.G.S.X.
0.3948.40.66At1g60720842366-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3948.40.67At4g097103770352transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3846.70.68At2g053903768626transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3846.70.68At1g40230840758transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3846.70.66At2g161103768127-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3846.70.67At3g321103769243transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3745.00.67At1g36230840529unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BMFOPO.I.H.G.S.X.
0.3745.00.66At1g36970840606-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.3643.60.67At1g41870840798transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.60.71At3g42380823232unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3541.60.66At1g422203767230transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.67At1g353703766940transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.68At1g44930--O.I.H.G.S.X.
0.3439.80.66At4g077903769958transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.66At5g27890832853-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.3439.80.69At2g09840815440-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3338.10.66At2g16690816170transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.67At3g422203769425transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.65At5g28590832956DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.3338.10.68At3g22870821859F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.3235.70.68At1g43730840963-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3235.70.70At2g128703767871transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.66At2g18610816376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3235.70.67At4g024903769793transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3133.80.69At5g44760834505C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.3133.80.66At4g09390826521transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3032.10.66At4g35710829723unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3032.10.66At1g474653767381transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.66At2g076603767968transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.66At1g426503767267transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.30.68At4g076003770530transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.30.67At3g308303769152transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.30.68At4g144703770327transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2624.40.65At3g24680822065transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2522.60.70At3g42540823263transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.67At4g084903770078transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.69At2g10070815464transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.66At5g28210832897mRNA capping enzyme family proteinF:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity;P:protein amino acid dephosphorylation, mRNA processing, dephosphorylation, mRNA capping;C:nucleus;MOFVPBO.I.H.G.S.X.
0.2319.30.66At2g204603767852transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2319.30.66At3g32140822978transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2319.30.66At3g42070823176transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2217.50.66At2g310803767983transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.68At3g42910823340transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.66At4g03890825697transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2014.40.66At5g347903771183transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2014.40.66At1g14470838009pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.1912.70.67At5g16640831526pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.1811.40.68At3g422903769440transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1811.40.66At4g30030829126aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOO.I.H.G.S.X.
0.168.80.67At5g20770832200transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.66At5g351303771249transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.146.80.67At4g088303770163transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.146.80.67At4g079203770071transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.135.80.68At3g30480822761transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.124.90.66At3g43280823403unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
56.199.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
55.799.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
53.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
53.799.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
53.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.299.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.899.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.899.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.499.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.299.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.599.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.099.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.399.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.799.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.599.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
31.799.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.899.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.499.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.499.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.399.6GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.799.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.799.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.499.5GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
15.399.4GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.699.4GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
12.799.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.699.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.499.3GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
12.499.3GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
12.399.3GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.299.3GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.999.3GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.999.2GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.999.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
9.799.1GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.099.1GSM133861Beynon_1-4-cat-SpikeMix4_Rep1_ATH1GSE5739Comparison of CATMA, Affymetrix and Agilent arraysLink to GEO
9.099.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.099.1GSM133776Lindsey_1-1_globular-apical_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0261GO:0006370Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.Link to AmiGO
0.0231GO:0016311The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.Link to AmiGO
0.0211GO:0006397Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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