CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g05450

Gene name transposable element gene

Module size 71 genes

NF 0.30

%ile 37.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At2g05450 3768432 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.52 67.4 0.73 At1g58265 842195 cytochrome P450-related F:electron carrier activity, monooxygenase activity, iron ion binding, heme binding;P:biological_process unknown;C:cellular_component unknown;PMFBO O.I. H.G. S.X.
0.51 66.3 0.69 At4g03640 825664 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.71 At5g28870 3770841 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 0.66 At2g15510 3768657 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.46 59.8 0.67 At5g29020 833029 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.46 59.8 0.66 At3g42260 3769437 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.46 59.8 0.68 At2g21040 816638 C2 domain-containing protein C2 domain-containing protein. Possible pseudogene of AT2G20990. O.I. H.G. S.X.
0.45 58.3 0.68 At2g13940 3768461 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.45 58.3 0.66 At3g28170 822443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.45 58.3 0.67 At4g07500 826197 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.45 58.3 0.68 At4g14170 827057 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. H.G. S.X.
0.44 57.2 0.70 At1g47770 841189 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. H.G. S.X.
0.43 55.3 0.67 At5g33260 3771121 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.43 55.3 0.66 At2g17330 3768013 - putative obtusifoliol 14-alpha demethylase. Expressed pseudogene. O.I. H.G. S.X.
0.42 53.9 0.69 At2g07240 815294 cysteine-type peptidase F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POFMBV O.I. H.G. S.X.
0.39 48.4 0.66 At1g60720 842366 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.39 48.4 0.67 At4g09710 3770352 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.38 46.7 0.68 At2g05390 3768626 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.38 46.7 0.68 At1g40230 840758 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.38 46.7 0.66 At2g16110 3768127 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.38 46.7 0.67 At3g32110 3769243 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.37 45.0 0.67 At1g36230 840529 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BMFOP O.I. H.G. S.X.
0.37 45.0 0.66 At1g36970 840606 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. H.G. S.X.
0.36 43.6 0.67 At1g41870 840798 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.36 43.6 0.71 At3g42380 823232 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.35 41.6 0.66 At1g42220 3767230 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.34 39.8 0.67 At1g35370 3766940 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.34 39.8 0.68 At1g44930 - - O.I. H.G. S.X.
0.34 39.8 0.66 At4g07790 3769958 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.34 39.8 0.66 At5g27890 832853 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. H.G. S.X.
0.34 39.8 0.69 At2g09840 815440 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.33 38.1 0.66 At2g16690 816170 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.33 38.1 0.67 At3g42220 3769425 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.33 38.1 0.65 At5g28590 832956 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. H.G. S.X.
0.33 38.1 0.68 At3g22870 821859 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.32 35.7 0.68 At1g43730 840963 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.32 35.7 0.70 At2g12870 3767871 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.32 35.7 0.66 At2g18610 816376 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.32 35.7 0.67 At4g02490 3769793 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.31 33.8 0.69 At5g44760 834505 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. H.G. S.X.
0.31 33.8 0.66 At4g09390 826521 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.30 32.1 0.66 At4g35710 829723 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.30 32.1 0.66 At1g47465 3767381 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.29 30.3 0.66 At2g07660 3767968 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.29 30.3 0.66 At1g42650 3767267 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.28 30.3 0.68 At4g07600 3770530 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.28 30.3 0.67 At3g30830 3769152 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.28 30.3 0.68 At4g14470 3770327 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.26 24.4 0.65 At3g24680 822065 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.25 22.6 0.70 At3g42540 823263 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.24 20.7 0.67 At4g08490 3770078 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.24 20.7 0.69 At2g10070 815464 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.24 20.7 0.66 At5g28210 832897 mRNA capping enzyme family protein F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity;P:protein amino acid dephosphorylation, mRNA processing, dephosphorylation, mRNA capping;C:nucleus;MOFVPB O.I. H.G. S.X.
0.23 19.3 0.66 At2g20460 3767852 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.23 19.3 0.66 At3g32140 822978 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.23 19.3 0.66 At3g42070 823176 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.22 17.5 0.66 At2g31080 3767983 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.21 15.8 0.68 At3g42910 823340 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.21 15.8 0.66 At4g03890 825697 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.20 14.4 0.66 At5g34790 3771183 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.20 14.4 0.66 At1g14470 838009 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. H.G. S.X.
0.19 12.7 0.67 At5g16640 831526 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. H.G. S.X.
0.18 11.4 0.68 At3g42290 3769440 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.18 11.4 0.66 At4g30030 829126 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO O.I. H.G. S.X.
0.16 8.8 0.67 At5g20770 832200 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.15 7.8 0.66 At5g35130 3771249 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.14 6.8 0.67 At4g08830 3770163 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.14 6.8 0.67 At4g07920 3770071 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.13 5.8 0.68 At3g30480 822761 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.12 4.9 0.66 At3g43280 823403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At2g05450	3768432	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.52	67.4	0.73	At1g58265	842195	cytochrome P450-related	F:electron carrier activity, monooxygenase activity, iron ion binding, heme binding;P:biological_process unknown;C:cellular_component unknown;PMFBO	O.I.	H.G.	S.X.
0.51	66.3	0.69	At4g03640	825664	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	0.71	At5g28870	3770841	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	0.66	At2g15510	3768657	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.46	59.8	0.67	At5g29020	833029	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.46	59.8	0.66	At3g42260	3769437	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.46	59.8	0.68	At2g21040	816638	C2 domain-containing protein	C2 domain-containing protein. Possible pseudogene of AT2G20990.	O.I.	H.G.	S.X.
0.45	58.3	0.68	At2g13940	3768461	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.45	58.3	0.66	At3g28170	822443	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.45	58.3	0.67	At4g07500	826197	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.45	58.3	0.68	At4g14170	827057	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	H.G.	S.X.
0.44	57.2	0.70	At1g47770	841189	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	H.G.	S.X.
0.43	55.3	0.67	At5g33260	3771121	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.43	55.3	0.66	At2g17330	3768013	-	putative obtusifoliol 14-alpha demethylase. Expressed pseudogene.	O.I.	H.G.	S.X.
0.42	53.9	0.69	At2g07240	815294	cysteine-type peptidase	F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POFMBV	O.I.	H.G.	S.X.
0.39	48.4	0.66	At1g60720	842366	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.39	48.4	0.67	At4g09710	3770352	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.38	46.7	0.68	At2g05390	3768626	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.38	46.7	0.68	At1g40230	840758	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.38	46.7	0.66	At2g16110	3768127	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.38	46.7	0.67	At3g32110	3769243	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.37	45.0	0.67	At1g36230	840529	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BMFOP	O.I.	H.G.	S.X.
0.37	45.0	0.66	At1g36970	840606	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	H.G.	S.X.
0.36	43.6	0.67	At1g41870	840798	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.36	43.6	0.71	At3g42380	823232	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.35	41.6	0.66	At1g42220	3767230	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.34	39.8	0.67	At1g35370	3766940	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.34	39.8	0.68	At1g44930		-	-	O.I.	H.G.	S.X.
0.34	39.8	0.66	At4g07790	3769958	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.34	39.8	0.66	At5g27890	832853	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	H.G.	S.X.
0.34	39.8	0.69	At2g09840	815440	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.33	38.1	0.66	At2g16690	816170	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.33	38.1	0.67	At3g42220	3769425	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.33	38.1	0.65	At5g28590	832956	DNA-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	H.G.	S.X.
0.33	38.1	0.68	At3g22870	821859	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.32	35.7	0.68	At1g43730	840963	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.32	35.7	0.70	At2g12870	3767871	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.32	35.7	0.66	At2g18610	816376	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.32	35.7	0.67	At4g02490	3769793	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.31	33.8	0.69	At5g44760	834505	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	H.G.	S.X.
0.31	33.8	0.66	At4g09390	826521	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.30	32.1	0.66	At4g35710	829723	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.30	32.1	0.66	At1g47465	3767381	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.29	30.3	0.66	At2g07660	3767968	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.29	30.3	0.66	At1g42650	3767267	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.28	30.3	0.68	At4g07600	3770530	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.28	30.3	0.67	At3g30830	3769152	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.28	30.3	0.68	At4g14470	3770327	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.26	24.4	0.65	At3g24680	822065	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.25	22.6	0.70	At3g42540	823263	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.24	20.7	0.67	At4g08490	3770078	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.24	20.7	0.69	At2g10070	815464	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.24	20.7	0.66	At5g28210	832897	mRNA capping enzyme family protein	F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity;P:protein amino acid dephosphorylation, mRNA processing, dephosphorylation, mRNA capping;C:nucleus;MOFVPB	O.I.	H.G.	S.X.
0.23	19.3	0.66	At2g20460	3767852	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.23	19.3	0.66	At3g32140	822978	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.23	19.3	0.66	At3g42070	823176	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.22	17.5	0.66	At2g31080	3767983	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.21	15.8	0.68	At3g42910	823340	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.21	15.8	0.66	At4g03890	825697	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.20	14.4	0.66	At5g34790	3771183	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.20	14.4	0.66	At1g14470	838009	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	H.G.	S.X.
0.19	12.7	0.67	At5g16640	831526	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	H.G.	S.X.
0.18	11.4	0.68	At3g42290	3769440	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.18	11.4	0.66	At4g30030	829126	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO	O.I.	H.G.	S.X.
0.16	8.8	0.67	At5g20770	832200	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.15	7.8	0.66	At5g35130	3771249	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.14	6.8	0.67	At4g08830	3770163	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.14	6.8	0.67	At4g07920	3770071	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.13	5.8	0.68	At3g30480	822761	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.12	4.9	0.66	At3g43280	823403	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
56.1 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.7 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.8 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.7 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.1 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.7 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.2 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.8 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.8 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.4 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.2 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.2 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.9 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.5 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.0 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.3 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.7 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.5 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.7 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.8 99.7 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.4 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.4 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.3 99.6 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
18.7 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.7 99.5 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.4 99.5 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
15.3 99.4 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
14.6 99.4 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.7 99.3 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.6 99.3 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.4 99.3 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.4 99.3 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
12.3 99.3 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.2 99.3 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.9 99.3 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
10.9 99.2 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
10.9 99.2 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.7 99.1 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.0 99.1 GSM133861 Beynon_1-4-cat-SpikeMix4_Rep1_ATH1 GSE5739 Comparison of CATMA, Affymetrix and Agilent arrays
9.0 99.1 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.0 99.1 GSM133776 Lindsey_1-1_globular-apical_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
56.1	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.7	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.8	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.7	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.1	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.7	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.2	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.8	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.8	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.4	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.2	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.2	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.9	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
45.5	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
45.0	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
44.3	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.7	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.5	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
31.7	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.8	99.7	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.4	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.4	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.3	99.6	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
18.7	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.7	99.5	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.4	99.5	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
15.3	99.4	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
14.6	99.4	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.7	99.3	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.6	99.3	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.4	99.3	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.4	99.3	GSM311279	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
12.3	99.3	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.2	99.3	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.9	99.3	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
10.9	99.2	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.9	99.2	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.7	99.1	GSM284393	Arabidopsis GCE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.0	99.1	GSM133861	Beynon_1-4-cat-SpikeMix4_Rep1_ATH1	GSE5739	Comparison of CATMA, Affymetrix and Agilent arrays
9.0	99.1	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.0	99.1	GSM133776	Lindsey_1-1_globular-apical_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.026 1 GO:0006370 Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
0.023 1 GO:0016311 The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
0.021 1 GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

SF	Genes	GO ID	Process Name
0.026	1	GO:0006370	Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
0.023	1	GO:0016311	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
0.021	1	GO:0006397	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g05450
Gene name	transposable element gene
Module size	71 genes
NF	0.30
%ile	37.1

Co-expression analysis

Gene ID At2g05450 Gene name transposable element gene Module size 71 genes NF 0.30 %ile 37.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g05450

Gene name transposable element gene

Module size 71 genes

NF 0.30

%ile 37.1

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays