Co-expression analysis

Gene ID At2g04070
Gene name antiporter/ drug transporter/ transporter
Module size 7 genes
NF 0.68
%ile 87.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4355.31.00At2g04070814943antiporter/ drug transporter/ transporterF:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMAO.I.H.G.S.X.
0.8089.80.71At1g10880837631unknown proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.8089.80.69At3g44560823581FAR8 (FATTY ACID REDUCTASE 8)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFPO.I.H.G.S.X.
0.8089.80.68At4g31950829325CYP82C3member of CYP82CO.I.H.G.S.X.
0.7788.00.67At4g15975827281protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;MPFOVO.I.H.G.S.X.
0.7586.90.71At1g16420838212MC8 (METACASPASE 8)Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0.O.I.H.G.S.X.
0.6781.60.73At3g28610822491ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
136.299.9E-MEXP-1443-raw-cel-1581869573
124.899.9GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
108.599.9E-MEXP-1443-raw-cel-1581869515
99.799.9GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
41.999.8GSM268245dor-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
30.899.7E-MEXP-711-raw-cel-1563002902
29.199.7GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
25.899.7GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
23.399.6GSM74904ice1_3H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
21.999.6GSM74905ice1_3H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
21.799.6GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
20.699.6GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
20.499.6GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
20.199.6GSM74903ice1_no treatment_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
15.799.5GSM10442WT Ovule 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
15.199.4GSM74902ice1_no treatment_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
14.999.4GSM311286Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
14.199.4GSM133025BC181-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
13.299.4GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.999.3GSM74907ice1_6H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
12.999.3GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.899.3GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
12.799.3GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.699.3GSM74906ice1_6H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
12.399.3GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.399.3GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.399.3E-MEXP-1246-raw-cel-1504120231
12.399.3E-MEXP-1246-raw-cel-1504120291
12.299.3GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.699.3GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.699.3GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.599.3GSM39200Col_C2GSE2169rre1 and rre2 mutantsLink to GEO
11.599.3GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.599.3GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
11.399.3GSM128720Pieterse_1-6_avrPstDC3000-24h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attackLink to GEO
11.299.2GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.199.2E-MEXP-1246-raw-cel-1504120201
10.899.2GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.699.2GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.399.2GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.299.2E-MEXP-1246-raw-cel-1504120171
10.299.2GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.299.2GSM39192RRE1_C2GSE2169rre1 and rre2 mutantsLink to GEO
10.299.2GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
9.999.1GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.899.1E-MEXP-1246-raw-cel-1504120261
9.799.1E-MEXP-1246-raw-cel-1504120321
9.699.1GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.699.1GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.599.1GSM39208RRE2_C2GSE2169rre1 and rre2 mutantsLink to GEO
9.499.1GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.499.1GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
8.899.0GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0010225A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 290 nm.Link to AmiGO
0.2221GO:0010421Programmed cell death induced by hydrogen peroxide. Programmed cell death is the cell death resulting from activation of endogenous cellular processes.Link to AmiGO
0.1251GO:0012501Cell death resulting from activation of endogenous cellular processes.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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