Co-expression analysis

Gene ID At2g03460
Gene name -
Module size 89 genes
NF 0.26
%ile 29.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g03460814875-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOO.I.H.G.S.X.
0.6176.70.77At5g37050833675-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.6075.70.78At5g36150833612ATPEN3 (putative pentacyclic triterpene synthase 3)F:lupeol synthase activity, catalytic activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMO.I.H.G.S.X.
0.5166.30.77At1g29780839856NLI interacting factor (NIF) family proteinF:phosphatase activity;P:unknown;C:mitochondrion;MOFPBVO.I.H.G.S.X.
0.4761.20.77At1g43570840940transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.76At3g25850822179DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.4558.30.74At1g24390839056unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.90.76At1g127203766711transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.74At1g74130843753rhomboid family proteinF:unknown;P:unknown;C:integral to membrane;BOFPAMO.I.H.G.S.X.
0.4152.40.79At1g14470838009pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.4050.80.77At2g076603767968transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3948.40.76At2g31590817717unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.3846.70.77At3g28470822477TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1)Member of the R2R3 factor gene family.O.I.H.G.S.X.
0.3846.70.76At1g06140837123pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.3846.70.75At4g11770826783kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.H.G.S.X.
0.3846.70.76At2g22350816767transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3745.00.76At3g42940823349-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3745.00.77At4g38070829963bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;MOBFPAVO.I.H.G.S.X.
0.3643.60.76At1g71420843483pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.3643.60.76At1g74630843802pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:endomembrane system;POMFBO.I.H.G.S.X.
0.3541.60.74At3g56550824822pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.3541.60.77At5g35640833536-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3541.60.74At2g43700818972lectin protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.3439.80.76At5g351503771255transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.78At2g07300815300transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.74At3g42600823272transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.74At2g38590818441F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.3338.10.75At4g04370825757pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.3235.70.75At5g65570836683pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.H.G.S.X.
0.3235.70.76At2g144003768244transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.75At3g48810824042pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBAO.I.H.G.S.X.
0.3133.80.76At1g74620843801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.H.G.S.X.
0.3133.80.74At4g35120829664kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPVBOFAO.I.H.G.S.X.
0.3032.10.77At1g44085841011glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFO.I.H.G.S.X.
0.3032.10.75At4g35170829670-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3032.10.76At1g56570842111pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.3032.10.76At5g28130832887transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3032.10.75At3g03510821246phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;PO.I.H.G.S.X.
0.2930.30.80At4g03890825697transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.77At2g107403767791transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.30.75At1g01410837547APUM22 (Arabidopsis Pumilio 22)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.2830.30.75At2g056403768197transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.30.75At5g282803770784-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.30.79At1g52640841696pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.2726.20.76At5g44270834450-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.2726.20.74At1g07740837288pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBAO.I.H.G.S.X.
0.2726.20.75At4g20090827754EMB1025 (embryo defective 1025)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBAO.I.H.G.S.X.
0.2624.40.74At3g19880821525F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2624.40.76At3g22870821859F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.2624.40.75At1g02570839485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2624.40.76At2g37730818350fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.H.G.S.X.
0.2522.60.77At2g20380816557kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2522.60.77At2g29250817474lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.2522.60.75At3g55780824744glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.H.G.S.X.
0.2522.60.75At5g49410835001unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2420.70.76At4g22650828361-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.2420.70.75At1g23810838992paired amphipathic helix repeat-containing proteinF:molecular_function unknown;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.H.G.S.X.
0.2319.30.74At4g18490827581unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAO.I.H.G.S.X.
0.2319.30.75At5g02990831714kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVFAO.I.H.G.S.X.
0.2319.30.78At4g28010828915pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.2319.30.76At2g28050817349pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.2319.30.74At2g34230817984-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.2217.50.75At2g18530816368protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MOPFBVAO.I.H.G.S.X.
0.2217.50.75At3g308303769152transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.75At5g14770831329pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.2115.80.75At5g49260834986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2115.80.77At1g06340837145agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.2115.80.75At1g32430840137F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2115.80.75At4g19190827658zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.2115.80.75At4g00020828230protein binding / single-stranded DNA bindingOrtholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.O.I.H.G.S.X.
0.2115.80.75At5g61920836313unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;MOFBPAVO.I.H.G.S.X.
0.2014.40.75At1g66170842932MMD1 (MALE MEIOCYTE DEATH 1)encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus.O.I.H.G.S.X.
0.2014.40.75At1g64310842737pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFO.I.H.G.S.X.
0.2014.40.74At1g74480843789RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.1912.70.75At5g58890836006AGL82 (AGAMOUS-LIKE 82)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.1912.70.74At3g42730823306transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1811.40.75At1g09220837442pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cytosolic ribosome;POMFO.I.H.G.S.X.
0.1811.40.74At5g08490830748pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.1710.20.76At1g36756840586unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1710.20.74At4g35710829723unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.168.80.75At5g03060831678unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAVO.I.H.G.S.X.
0.168.80.75At5g28790832995transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.75At2g42340818835unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.146.80.77At3g43940823510unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.146.80.75At3g55650824731pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFAO.I.H.G.S.X.
0.135.80.75At1g68930843226pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.135.80.75At5g66500836782pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.124.90.74At2g06500815208hAT dimerisation domain-containing protein / transposase-relatedF:protein dimerization activity;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.H.G.S.X.
0.124.90.75At2g23945816927chloroplast nucleoid DNA-binding protein-relatedF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMOFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.299.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.999.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.799.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.999.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.699.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.099.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
40.699.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.499.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.999.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.799.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
38.599.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.299.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.899.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.199.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.299.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.999.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.099.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.899.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.099.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.599.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.899.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
26.899.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.499.6GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
22.599.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.199.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.499.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.799.5GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
17.099.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
12.999.3GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
12.499.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.699.3GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
9.399.1E-MEXP-432-raw-cel-590864447
9.299.1GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0221GO:0048314The process by which the anatomical structures of the embryo sac are generated and organized. Morphogenesis pertains to the creation of form. The embryo sac develops from the megaspore in heterosporous plants.Link to AmiGO
0.0221GO:0048658The process whose specific outcome is the progression of the tapetal layer over time, from its formation to the mature structure.Link to AmiGO
0.0211GO:0055046The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.017100100Steroid biosynthesisLink to KEGG PATHWAY
0.014201062Biosynthesis of terpenoids and steroidsLink to KEGG PATHWAY
0.013100620Pyruvate metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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