Co-expression analysis

Gene ID At2g03210
Gene name FUT2 (FUCOSYLTRANSFERASE 2)
Module size 16 genes
NF 0.38
%ile 51.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g03210814850FUT2 (FUCOSYLTRANSFERASE 2)member of Glycosyltransferase Family- 37O.I.H.G.S.X.
0.5267.40.83At3g53070824473beta-galactosidase-relatedF:unknown;P:N-terminal protein myristoylation;C:endomembrane system;PO.I.H.G.S.X.
0.4761.20.82At4g05260825874ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;POO.I.H.G.S.X.
0.4558.30.84At5g46140834656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.90.82At2g1636081613240S ribosomal protein S25 (RPS25A)F:structural constituent of ribosome;P:translation;C:in 6 components;MFPOO.I.H.G.S.X.
0.3948.40.83At1g10890837632unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.H.G.S.X.
0.3948.40.82At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBO.I.H.G.S.X.
0.3439.80.82At1g26360839178MES13 (METHYL ESTERASE 13)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.H.G.S.X.
0.3338.10.82At5g61090836230nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVAO.I.H.G.S.X.
0.3235.70.83At3g15910820834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3032.10.82At2g35460818111harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3032.10.83At5g11120830980unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2830.30.82At5g37040833674F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2726.20.82At3g19230821457leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:endomembrane system;POMBFAO.I.H.G.S.X.
0.2319.30.84At5g12280831103RNA bindingF:RNA binding;P:protein modification process, RNA processing;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.168.80.82At3g06600819839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.799.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.699.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.499.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.299.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.599.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.199.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.399.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.099.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.999.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.199.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.399.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.899.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.099.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.399.6GSM265474Arabidopsis, whole roots, -Fe, 72 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
20.699.6GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
20.499.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.299.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.699.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.099.5GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.499.5GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.899.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.399.5E-MEXP-1474-raw-cel-1593932865
15.999.5GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.999.4GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
14.899.4GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
14.899.4GSM265472Arabidopsis, whole roots, -Fe, 48 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
14.299.4GSM265471Arabidopsis, whole roots, -Fe, 48 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
12.899.3GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.299.3GSM265473Arabidopsis, whole roots, -Fe, 72 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
11.299.2GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
11.099.2E-MEXP-1474-raw-cel-1593932929
10.199.2GSM265430Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
10.099.2E-MEXP-1474-raw-cel-1593932801
9.899.1GSM311286Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.799.1GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.699.1GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
9.699.1GSM265433Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
9.699.1GSM131369AtGen_6-5321_Genotoxicstress-Roots-3.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
9.599.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.499.1GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0651GO:0042546The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.Link to AmiGO
0.0342GO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).Link to AmiGO
0.0211GO:0006396Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.008103010RibosomeLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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