CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g79360

Gene name ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2)

Module size 5 genes

NF 0.15

%ile 11.7

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.20 14.4 1.00 At1g79360 844274 ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:ion transport;C:integral to membrane, membrane;BMFPOA O.I. H.G. S.X.
0.44 57.2 0.59 At5g02720 831821 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.25 22.6 0.58 At1g08730 837394 XIC Class XI myosin gene O.I. H.G. S.X.
0.12 4.9 0.62 At4g26830 828790 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. H.G. S.X.
0.09 2.8 0.59 At1g26320 839174 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPA O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.20	14.4	1.00	At1g79360	844274	ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:ion transport;C:integral to membrane, membrane;BMFPOA	O.I.	H.G.	S.X.
0.44	57.2	0.59	At5g02720	831821	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.25	22.6	0.58	At1g08730	837394	XIC	Class XI myosin gene	O.I.	H.G.	S.X.
0.12	4.9	0.62	At4g26830	828790	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	H.G.	S.X.
0.09	2.8	0.59	At1g26320	839174	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPA	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.9 99.7 GSM134513 Col-0_4day_dark_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
30.0 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.8 99.6 E-MEXP-1468-raw-cel-1591138754
24.4 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.6 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.3 99.6 E-MEXP-1468-raw-cel-1591138721
21.9 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.2 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.9 99.6 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
19.7 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.6 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.9 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.9 99.5 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.7 99.5 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.4 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.1 99.5 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.7 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.6 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.4 99.5 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.9 99.5 E-MEXP-1468-raw-cel-1591139018
16.9 99.5 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
16.9 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.7 99.5 E-MEXP-1468-raw-cel-1591138985
16.4 99.5 GSM184498 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.4 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.9 99.5 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.5 99.5 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.9 99.4 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.6 99.4 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.3 99.4 GSM271082 Arabidopsis plant (tga2-5-6), 4h_response to OPDA_rep3 GSE10732 Identification of TGA-regulated genes in response to phytoprostane A1 and OPDA
12.8 99.3 GSM184501 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.5 99.3 GSM134517 Col-0_4day_red illumination_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
12.4 99.3 E-MEXP-1468-raw-cel-1591138655
12.1 99.3 GSM226267 WT(Ler)_Dark_replicate1 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
12.1 99.3 GSM134514 Col-0_4day_dark_-lincomycin_rep2 GSE5759 red illumination w/o lincomycin
11.9 99.3 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.6 99.3 GSM134515 Col-0_4day_dark_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
11.0 99.2 GSM184921 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
10.5 99.2 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.5 99.2 E-MEXP-1468-raw-cel-1591138853
10.2 99.2 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
10.2 99.2 GSM184500 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.9 99.1 E-MEXP-1304-raw-cel-1530618275
9.8 99.1 GSM184502 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.7 99.1 GSM134516 Col-0_4day_dark_+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
9.5 99.1 E-MEXP-1304-raw-cel-1530618235
9.5 99.1 GSM282697 Col_BRZ_rep1 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
9.5 99.1 E-MEXP-1468-raw-cel-1591138919
9.4 99.1 GSM282698 Col_BRZ_rep2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
9.1 99.1 E-MEXP-1468-raw-cel-1591138688
8.9 99.0 GSM142752 MJ001_ATH1_A3-jones-rh1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
8.9 99.0 GSM179971 Arabidopsis roots, mock treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
8.9 99.0 E-MEXP-1468-raw-cel-1591138787
8.7 99.0 E-MEXP-1304-raw-cel-1530618136
8.6 99.0 GSM265418 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
35.9	99.7	GSM134513	Col-0_4day_dark_-lincomycin_rep1	GSE5759	red illumination w/o lincomycin
30.0	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.8	99.6	E-MEXP-1468-raw-cel-1591138754
24.4	99.6	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.6	99.6	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
22.3	99.6	E-MEXP-1468-raw-cel-1591138721
21.9	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.2	99.6	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.9	99.6	GSM184922	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
19.7	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.6	99.6	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.9	99.5	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
18.9	99.5	GSM184508	Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
18.7	99.5	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.4	99.5	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.1	99.5	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.7	99.5	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.6	99.5	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.4	99.5	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.9	99.5	E-MEXP-1468-raw-cel-1591139018
16.9	99.5	GSM184924	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
16.9	99.5	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.7	99.5	E-MEXP-1468-raw-cel-1591138985
16.4	99.5	GSM184498	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.4	99.5	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.9	99.5	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.5	99.5	GSM184509	Pericycle root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.9	99.4	GSM184499	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.6	99.4	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.3	99.4	GSM271082	Arabidopsis plant (tga2-5-6), 4h_response to OPDA_rep3	GSE10732	Identification of TGA-regulated genes in response to phytoprostane A1 and OPDA
12.8	99.3	GSM184501	Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.5	99.3	GSM134517	Col-0_4day_red illumination_-lincomycin_rep1	GSE5759	red illumination w/o lincomycin
12.4	99.3	E-MEXP-1468-raw-cel-1591138655
12.1	99.3	GSM226267	WT(Ler)_Dark_replicate1	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
12.1	99.3	GSM134514	Col-0_4day_dark_-lincomycin_rep2	GSE5759	red illumination w/o lincomycin
11.9	99.3	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.6	99.3	GSM134515	Col-0_4day_dark_+lincomycin_rep1	GSE5759	red illumination w/o lincomycin
11.0	99.2	GSM184921	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
10.5	99.2	GSM184503	Pericycle root cells 2hr KCl control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.5	99.2	E-MEXP-1468-raw-cel-1591138853
10.2	99.2	GSM265413	Arabidopsis, whole roots, -Fe, replicate 3	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
10.2	99.2	GSM184500	Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.9	99.1	E-MEXP-1304-raw-cel-1530618275
9.8	99.1	GSM184502	Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.7	99.1	GSM134516	Col-0_4day_dark_+lincomycin_rep2	GSE5759	red illumination w/o lincomycin
9.5	99.1	E-MEXP-1304-raw-cel-1530618235
9.5	99.1	GSM282697	Col_BRZ_rep1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
9.5	99.1	E-MEXP-1468-raw-cel-1591138919
9.4	99.1	GSM282698	Col_BRZ_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
9.1	99.1	E-MEXP-1468-raw-cel-1591138688
8.9	99.0	GSM142752	MJ001_ATH1_A3-jones-rh1	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
8.9	99.0	GSM179971	Arabidopsis roots, mock treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
8.9	99.0	E-MEXP-1468-raw-cel-1591138787
8.7	99.0	E-MEXP-1304-raw-cel-1530618136
8.6	99.0	GSM265418	Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.111 1 GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.091 1 GO:0030048 Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.111	1	GO:0006811	The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.091	1	GO:0030048	Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g79360
Gene name	ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2)
Module size	5 genes
NF	0.15
%ile	11.7

Co-expression analysis

Gene ID At1g79360 Gene name ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2) Module size 5 genes NF 0.15 %ile 11.7

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g79360

Gene name ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2)

Module size 5 genes

NF 0.15

%ile 11.7

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays