Co-expression analysis

Gene ID At1g78995
Gene name unknown protein
Module size 35 genes
NF 0.29
%ile 35.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g78995844240unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.5974.70.90At5g20935832218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BPOO.I.H.G.S.X.
0.5166.30.88At5g39210833917CRR7 (CHLORORESPIRATORY REDUCTION 7)Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex.O.I.H.G.S.X.
0.5065.30.88At3g22210821785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4761.20.86At3g62410825414CP12-2CP12-2 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. CP12-2 is coordinately regulated by light with the photosynthetic GAPDH and PRK. The annotation of this gene is based on article 32494.O.I.H.G.S.X.
0.3948.40.87At1g75460843882ATP-dependent protease La (LON) domain-containing proteinF:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPFO.I.H.G.S.X.
0.3846.70.87At2g31040817656ATP synthase protein I -relatedF:hydrogen ion transmembrane transporter activity;P:ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), chloroplast;BPOVO.I.H.G.S.X.
0.3846.70.88At5g08410830739FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)F:ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity;P:photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis;C:chloroplast;BPOO.I.H.G.S.X.
0.3541.60.87At3g02730821260TRXF1 (THIOREDOXIN F-TYPE 1)F:enzyme activator activity;P:positive regulation of catalytic activity;C:chloroplast, chloroplast stroma;BOMPFAVO.I.H.G.S.X.
0.3439.80.88At3g01660821098methyltransferaseF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAFO.I.H.G.S.X.
0.3439.80.86At5g14970831349unknown proteinF:unknown;P:unknown;C:unknown;BOPO.I.H.G.S.X.
0.3439.80.86At4g21210827869ATRP1 (PPDK REGULATORY PROTEIN)Encodes a PPDK regulatory protein that has both protein kinase and protein phosphatase activities towards PPDK (pyruvate orthophosphate dikinase).O.I.H.G.S.X.
0.3338.10.88At1g14150837974oxygen evolving enhancer 3 (PsbQ) family proteinF:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;PO.I.H.G.S.X.
0.3338.10.87At1g19740838563ATP-dependent protease La (LON) domain-containing proteinF:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPFO.I.H.G.S.X.
0.3338.10.86At1g27480839639lecithin:cholesterol acyltransferase family protein / LACT family proteinF:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:plasma membrane, vacuole;MPOBO.I.H.G.S.X.
0.3133.80.87At1g70760843413CRR23 ((chlororespiratory reduction 23)a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.O.I.H.G.S.X.
0.3032.10.86At3g16250820871NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster.O.I.H.G.S.X.
0.3032.10.86At3g17930819775unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BOPO.I.H.G.S.X.
0.2930.30.87At1g20020838591FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2)Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stromaO.I.H.G.S.X.
0.2830.30.86At5g07020830593proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVOO.I.H.G.S.X.
0.2830.30.86At4g10300826622-F:molecular_function unknown;P:unknown;C:chloroplast;BOPO.I.H.G.S.X.
0.2830.30.86At3g50685824232unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.2624.40.87At4g33470829484hda14 (histone deacetylase 14)Encodes HDA14, a member of the histone deacetylase family proteins.O.I.H.G.S.X.
0.2420.70.86At4g39710830126immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFAO.I.H.G.S.X.
0.2319.30.86At3g15360820775TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)encodes a prokaryotic thioredoxinO.I.H.G.S.X.
0.2319.30.86At3g10060820167immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFAO.I.H.G.S.X.
0.2217.50.86At3g51510824314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;POO.I.H.G.S.X.
0.2217.50.86At2g04700815013ferredoxin thioredoxin reductase catalytic beta chain family proteinF:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPAO.I.H.G.S.X.
0.2115.80.86At5g39830833979DEG8Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.O.I.H.G.S.X.
0.2115.80.86At1g03680839436ATHM1encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.O.I.H.G.S.X.
0.2115.80.86At2g21960816732unknown proteinF:unknown;P:unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.2014.40.86At3g12685820449-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.H.G.S.X.
0.1811.40.86At4g03150828059unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO.I.H.G.S.X.
0.168.80.86At4g27700828884rhodanese-like domain-containing proteinF:molecular_function unknown;P:aging;C:chloroplast thylakoid membrane, chloroplast;BPOAO.I.H.G.S.X.
0.168.80.85At5g53490835431thylakoid lumenal 17.4 kDa protein, chloroplastthylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.699.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.199.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.099.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.999.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.699.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.599.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.799.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.599.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.499.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.499.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.399.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.299.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.399.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.399.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.999.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.699.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.899.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.799.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.499.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.599.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.399.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
17.099.5GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
17.099.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.699.5GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.099.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.499.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.899.3E-ATMX-35-raw-cel-1574334816
11.399.3E-MEXP-807-raw-cel-1173273144
10.699.2GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
10.699.2E-MEXP-807-raw-cel-1173273252
10.599.2GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.799.1E-ATMX-35-raw-cel-1574334832
9.299.1GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
8.999.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1363GO:0043085Any process that activates or increases the activity of an enzyme.Link to AmiGO
0.0822GO:0009773Electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.Link to AmiGO
0.0561GO:0018316The oxidation of two peptidyl-cysteine residues to form a peptidyl-L-cystine (dicysteine) in which segments of peptide chain are linked by a disulfide bond; the cross-link may be between different or the same peptide chain.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.037200195PhotosynthesisLink to KEGG PATHWAY
0.003201100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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