CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g78510

Gene name SPS1 (solanesyl diphosphate synthase 1)

Module size 5 genes

NF 0.56

%ile 77.7

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.89 94.6 1.00 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. H.G. S.X.
0.86 93.1 0.89 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. H.G. S.X.
0.75 86.9 0.90 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. H.G. S.X.
0.38 46.7 0.90 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA O.I. H.G. S.X.
0.33 38.1 0.88 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.89	94.6	1.00	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	H.G.	S.X.
0.86	93.1	0.89	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	H.G.	S.X.
0.75	86.9	0.90	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	H.G.	S.X.
0.38	46.7	0.90	At5g19850	832105	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPFA	O.I.	H.G.	S.X.
0.33	38.1	0.88	At1g53090	841743	SPA4 (SPA1-RELATED 4)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
96.1 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
82.1 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.9 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.3 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.4 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
76.5 99.9 GSM106833 opr3_JA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
74.1 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
73.2 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.3 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.8 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
67.8 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.6 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
63.3 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
61.6 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
60.7 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.1 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.7 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.6 99.8 GSM133779 Lindsey_1-5_globular-basal_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
52.2 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.5 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.3 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.9 99.8 GSM106919 opr3_OPDA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
35.2 99.7 GSM106825 opr3_0 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
34.9 99.7 GSM245919 csn3-1 mutant dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
33.0 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.1 99.7 GSM106920 opr3_OPDA_0.5 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
30.2 99.7 GSM106934 opr3_OPDA_8 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
27.6 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.9 99.7 GSM106908 opr3_JA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
26.4 99.7 GSM106922 opr3_OPDA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
25.8 99.7 GSM106921 opr3_OPDA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
25.8 99.7 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
24.7 99.6 GSM106827 opr3_0 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
23.7 99.6 GSM106909 opr3-JA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
23.6 99.6 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
22.6 99.6 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
20.8 99.6 GSM106907 opr3_JA_0.5 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
20.1 99.6 GSM106924 opr3_OPDA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
19.9 99.6 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
19.0 99.5 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
18.9 99.5 GSM131617 ATGE_53_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
18.8 99.5 E-MEXP-1592-raw-cel-1617526864
18.0 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.7 99.5 GSM106966 opr3_OPDA_8 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
17.2 99.5 GSM131615 ATGE_53_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.0 99.5 GSM131616 ATGE_53_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.0 99.5 E-MEXP-1592-raw-cel-1617526968
16.4 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.6 99.5 GSM106973 ws_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
14.4 99.4 GSM106910 opr3_JA_2 hrs_rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
14.0 99.4 GSM106911 opr2_JA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
13.5 99.4 GSM88049 csn4-1_mutant replicate 1 GSE3865 CSN4-1 mutant analysis
13.4 99.4 E-MEXP-849-raw-cel-1181980966
12.1 99.3 GSM131582 ATGE_33_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
11.7 99.3 GSM106912 opr3_JA 8hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.6 99.3 GSM131584 ATGE_33_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
11.5 99.3 GSM131583 ATGE_33_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
11.3 99.3 E-MEXP-1592-raw-cel-1617526872
11.2 99.2 GSM106923 opr3_OPDA_2 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.2 99.2 E-MEXP-1592-raw-cel-1617526896
11.0 99.2 GSM128729 Hennig_1-1_flower-buds-CK_021114_1_A_Rep1_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
10.7 99.2 E-MEXP-1592-raw-cel-1617526992
9.9 99.1 E-MEXP-849-raw-cel-1181980942
9.8 99.1 E-MEXP-849-raw-cel-1181980974
9.8 99.1 E-MEXP-1592-raw-cel-1617526936
9.3 99.1 E-MEXP-849-raw-cel-1181980958
8.6 99.0 GSM106828 opr3_0 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
8.6 99.0 E-MEXP-849-raw-cel-1181980902

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
96.1	99.9	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
82.1	99.9	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.9	99.9	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.3	99.9	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.4	99.9	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
76.5	99.9	GSM106833	opr3_JA_0.5 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
74.1	99.9	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
73.2	99.9	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.3	99.9	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.8	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
67.8	99.9	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.6	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
63.3	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
61.6	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
60.7	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.1	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.7	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
52.6	99.8	GSM133779	Lindsey_1-5_globular-basal_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
52.2	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.5	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.3	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
45.9	99.8	GSM106919	opr3_OPDA_0.5 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
35.2	99.7	GSM106825	opr3_0 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
34.9	99.7	GSM245919	csn3-1 mutant dark replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
33.0	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
31.1	99.7	GSM106920	opr3_OPDA_0.5 hr_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
30.2	99.7	GSM106934	opr3_OPDA_8 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
27.6	99.7	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.9	99.7	GSM106908	opr3_JA_0.5 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
26.4	99.7	GSM106922	opr3_OPDA_2 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
25.8	99.7	GSM106921	opr3_OPDA_0.5 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
25.8	99.7	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
24.7	99.6	GSM106827	opr3_0 hr_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
23.7	99.6	GSM106909	opr3-JA_2 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
23.6	99.6	GSM131592	ATGE_36_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
22.6	99.6	GSM131591	ATGE_36_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
20.8	99.6	GSM106907	opr3_JA_0.5 hr_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
20.1	99.6	GSM106924	opr3_OPDA_2 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
19.9	99.6	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
19.0	99.5	GSM131593	ATGE_36_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
18.9	99.5	GSM131617	ATGE_53_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
18.8	99.5	E-MEXP-1592-raw-cel-1617526864
18.0	99.5	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.7	99.5	GSM106966	opr3_OPDA_8 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
17.2	99.5	GSM131615	ATGE_53_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
17.0	99.5	GSM131616	ATGE_53_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
17.0	99.5	E-MEXP-1592-raw-cel-1617526968
16.4	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.6	99.5	GSM106973	ws_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
14.4	99.4	GSM106910	opr3_JA_2 hrs_rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
14.0	99.4	GSM106911	opr2_JA_2 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
13.5	99.4	GSM88049	csn4-1_mutant replicate 1	GSE3865	CSN4-1 mutant analysis
13.4	99.4	E-MEXP-849-raw-cel-1181980966
12.1	99.3	GSM131582	ATGE_33_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
11.7	99.3	GSM106912	opr3_JA 8hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.6	99.3	GSM131584	ATGE_33_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
11.5	99.3	GSM131583	ATGE_33_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
11.3	99.3	E-MEXP-1592-raw-cel-1617526872
11.2	99.2	GSM106923	opr3_OPDA_2 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.2	99.2	E-MEXP-1592-raw-cel-1617526896
11.0	99.2	GSM128729	Hennig_1-1_flower-buds-CK_021114_1_A_Rep1_ATH1	GSE5526	Transcriptional Programs of Early Reproductive Stages in Arabidopsis
10.7	99.2	E-MEXP-1592-raw-cel-1617526992
9.9	99.1	E-MEXP-849-raw-cel-1181980942
9.8	99.1	E-MEXP-849-raw-cel-1181980974
9.8	99.1	E-MEXP-1592-raw-cel-1617526936
9.3	99.1	E-MEXP-849-raw-cel-1181980958
8.6	99.0	GSM106828	opr3_0 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
8.6	99.0	E-MEXP-849-raw-cel-1181980902

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0006744 The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme.
0.051 1 GO:0009637 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
0.044 1 GO:0010218 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.

SF	Genes	GO ID	Process Name
0.154	1	GO:0006744	The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme.
0.051	1	GO:0009637	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
0.044	1	GO:0010218	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.043 1 00900 Terpenoid backbone biosynthesis

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.043	1	00900	Terpenoid backbone biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g78510
Gene name	SPS1 (solanesyl diphosphate synthase 1)
Module size	5 genes
NF	0.56
%ile	77.7

Co-expression analysis

Gene ID At1g78510 Gene name SPS1 (solanesyl diphosphate synthase 1) Module size 5 genes NF 0.56 %ile 77.7

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.043100900Terpenoid backbone biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g78510

Gene name SPS1 (solanesyl diphosphate synthase 1)

Module size 5 genes

NF 0.56

%ile 77.7

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.043 1 00900 Terpenoid backbone biosynthesis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays