Co-expression analysis

Gene ID At1g78460
Gene name SOUL heme-binding family protein
Module size 98 genes
NF 0.60
%ile 81.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g78460844182SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:endomembrane system;OMPBAO.I.H.G.S.X.
0.7486.10.92At2g45310819139GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4)UDP-D-glucuronate 4-epimeraseO.I.H.G.S.X.
0.7284.80.90At2g28640817413ATEXO70H5 (exocyst subunit EXO70 family protein H5)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.H.G.S.X.
0.7284.80.89At3g02555820627unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7184.20.91At4g16745827378exostosin family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PMOBFO.I.H.G.S.X.
0.7083.50.93At1g17540838328kinaseF:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.6982.90.89At5g61710836293unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.6882.20.92At1g61860842483protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.6882.20.92At2g43230818924serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.6882.20.89At3g04630819621WDL1Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development.O.I.H.G.S.X.
0.6680.10.89At4g33230829459pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.H.G.S.X.
0.6680.10.90At2g21990816735unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.6680.10.92At3g20300821574unknown proteinF:unknown;P:unknown;C:unknown;POO.I.H.G.S.X.
0.6680.10.91At4g39610830115unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO.I.H.G.S.X.
0.6579.60.91At2g36020818175HVA22J (HVA22-LIKE PROTEIN J)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.H.G.S.X.
0.6579.60.90At5g25340832606unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.6579.60.92At3g18810821414protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OMBPFVAO.I.H.G.S.X.
0.6579.60.89At4g10010826592protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVAO.I.H.G.S.X.
0.6478.90.89At2g47340819347invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PFOBO.I.H.G.S.X.
0.6478.90.91At3g52460824411hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PMOFBVAO.I.H.G.S.X.
0.6478.90.91At2g26850817226F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.H.G.S.X.
0.6478.90.89At2g25600817099SPIK (Shaker Pollen Inward K+ channel)mutant has Impaired pollen-tube growth; member of Shaker K+ channel family, also Stelar K+ outward rectifying channel (SKOR) familyO.I.H.G.S.X.
0.6478.90.91At4g24640828566APPB1Encodes AppB protein (AppB1).O.I.H.G.S.X.
0.6478.90.92At5g20390832161beta-1,3-glucanase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBO.I.H.G.S.X.
0.6378.10.89At3g59290825098epsin N-terminal homology (ENTH) domain-containing proteinF:binding;P:unknown;C:unknown;MFOPBVAO.I.H.G.S.X.
0.6378.10.90At5g61360836257unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.6378.10.90At5g18910832009protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:peroxisome;MPOBFVAO.I.H.G.S.X.
0.6277.30.90At3g02810821236protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAO.I.H.G.S.X.
0.6277.30.91At1g01310839333allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFOBO.I.H.G.S.X.
0.6277.30.91At2g21540816693SFH3 (SEC14-LIKE 3)F:phosphatidylinositol transporter activity;P:flower development, transport;C:intracellular;MPFOO.I.H.G.S.X.
0.6277.30.90At2g41860818786CPK14member of Calcium Dependent Protein KinaseO.I.H.G.S.X.
0.6277.30.89At4g03290827993calcium-binding protein, putativeF:calcium ion binding;P:response to cold;C:nucleus;MFPOBO.I.H.G.S.X.
0.6277.30.89At1g50610841483leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVAO.I.H.G.S.X.
0.6277.30.91At2g28180817364ATCHX8member of Putative Na+/H+ antiporter familyO.I.H.G.S.X.
0.6176.70.90At5g17400831606ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1)This gene is predicted to encode an ER-localized adenine nucleotide transporter with six putative transmembrane helices. It appears to act as a ATP:ADP antiporter when expressed in E.coli plasma membranes. Transcript levels for several ER-localized chaperones (e.g. BIP1/2) and other ATP-requiring ER proteins (e.g. CPK2) are reduced in er-ant1 knock-out lines, suggesting a lack of adequate ATP transport into the ER in these mutants. They also have reduced seed oil and seed protein levels.O.I.H.G.S.X.
0.6176.70.88At1g30710839951FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.H.G.S.X.
0.6176.70.91At2g22180816752hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBVO.I.H.G.S.X.
0.6176.70.90At5g12180831091CPK17member of Calcium Dependent Protein KinaseO.I.H.G.S.X.
0.6176.70.89At4g04980825839-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVAO.I.H.G.S.X.
0.6176.70.90At2g33270817890ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3)Encodes a member of the thioredoxin family protein. Located in the chloroplast.O.I.H.G.S.X.
0.6176.70.89At2g33460817911RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis.O.I.H.G.S.X.
0.6176.70.91At3g21570821711unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.6176.70.89At1g10620837605protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOPBFVAO.I.H.G.S.X.
0.6176.70.90At4g38230829980CPK26member of Calcium Dependent Protein KinaseO.I.H.G.S.X.
0.6075.70.91At5g56750835777Ndr family proteinF:molecular_function unknown;P:cell differentiation;C:cellular_component unknown;MPBOO.I.H.G.S.X.
0.6075.70.90At5g42490834256kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVAO.I.H.G.S.X.
0.6075.70.91At1g23350838944invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6075.70.90At4g39180830073SEC14encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiaeO.I.H.G.S.X.
0.6075.70.89At1g79860844325ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth.O.I.H.G.S.X.
0.6075.70.89At1g02000839289GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2)UDP-D-glucuronate 4-epimeraseO.I.H.G.S.X.
0.6075.70.90At3g19310821465phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.H.G.S.X.
0.5974.70.90At1g11770837722FAD binding / catalytic/ electron carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAO.I.H.G.S.X.
0.5974.70.91At1g51240841547-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5974.70.90At1g25240839107epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat, mitochondrion;PMFBAOO.I.H.G.S.X.
0.5974.70.89At1g58120842179unknown proteinF:unknown;P:unknown;C:unknown;PO.I.H.G.S.X.
0.5974.70.89At1g01980839296ATSEC1Amember of Reticuline oxidase-like familyO.I.H.G.S.X.
0.5974.70.90At1g64740842782TUA1 (ALPHA-1 TUBULIN)alpha-tubulin expressed primarily in stamens and mature pollenO.I.H.G.S.X.
0.5873.80.89At1g01460839469PIPK11Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A.O.I.H.G.S.X.
0.5873.80.89At1g66210842936subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOMFAO.I.H.G.S.X.
0.5873.80.89At2g38500818432-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.5873.80.90At5g58170835929SVL5 (SHV3-LIKE 5)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMFO.I.H.G.S.X.
0.5873.80.88At3g01630819891-F:unknown;P:unknown;C:unknown;PBOFAMO.I.H.G.S.X.
0.5873.80.89At4g07960826301ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)encodes a gene similar to cellulose synthaseO.I.H.G.S.X.
0.5873.80.89At3g43860823499AtGH9A4 (Arabidopsis thaliana Glycosyl Hydrolase 9A4)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.H.G.S.X.
0.5873.80.89At5g39420833938cdc2cAt (Arabidopsis thaliana cdc2c)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAO.I.H.G.S.X.
0.5773.80.90At3g17060820963pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.H.G.S.X.
0.5773.80.89At5g24240832491phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:protein modification process;C:peroxisome;MPOFVBO.I.H.G.S.X.
0.5773.80.89At3g06260819800GATL4 (Galacturonosyltransferase-like 4)Encodes a protein with putative galacturonosyltransferase activity.O.I.H.G.S.X.
0.5773.80.89At2g33420817906-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.5773.80.89At5g54780835568RAB GTPase activatorF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:mitochondrion;MFOPO.I.H.G.S.X.
0.5773.80.89At1g04540839498C2 domain-containing proteinF:unknown;P:biological_process unknown;C:membrane;PMOFBO.I.H.G.S.X.
0.5673.00.89At3g13065820494SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.5673.00.88At2g40990818699zinc ion bindingF:zinc ion binding;P:unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.5673.00.89At5g14890831341NHL repeat-containing proteinF:unknown;P:unknown;C:endomembrane system;BOMPAO.I.H.G.S.X.
0.5673.00.88At2g07040815274PRK2APollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth.O.I.H.G.S.X.
0.5673.00.89At3g21700821724SGP2Monomeric G protein. Expressed in root epidermal cells that are destined to become atrichoblasts. Also expressed during pollen development and in the pollen tube tip.O.I.H.G.S.X.
0.5570.60.89At2g20320816551-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.H.G.S.X.
0.5570.60.88At4g25780828683pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.H.G.S.X.
0.5570.60.90At1g70790843416C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.5570.60.89At3g25165822108RALFL25 (ralf-like 25)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.H.G.S.X.
0.5570.60.90At4g05330825881AGD13 (ARF-GAP domain 13)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.O.I.H.G.S.X.
0.5570.60.90At2g46260819234BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVO.I.H.G.S.X.
0.5469.50.89At4g20160827762-F:unknown;P:unknown;C:chloroplast;MOFBPVAO.I.H.G.S.X.
0.5469.50.89At5g12000831073kinaseF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.H.G.S.X.
0.5469.50.89At3g26110822209-F:molecular_function unknown;P:unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.5469.50.89At2g24450816981FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR)F:molecular_function unknown;P:N-terminal protein myristoylation;C:anchored to membrane;PBMOFVAO.I.H.G.S.X.
0.5469.50.89At4g39110830066protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.H.G.S.X.
0.5469.50.89At3g43120823371auxin-responsive protein-relatedF:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.H.G.S.X.
0.5368.60.89At5g15110831363lyase/ pectate lyaseF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOO.I.H.G.S.X.
0.5267.40.90At1g12450837802-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFAO.I.H.G.S.X.
0.5267.40.89At3g04700819628unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5267.40.89At5g50030835067invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5267.40.88At5g48140834866polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.H.G.S.X.
0.5166.30.90At2g02970814826nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:biological_process unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.5166.30.89At2g45800819188LIM domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFO.I.H.G.S.X.
0.5166.30.89At3g21180821671ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.O.I.H.G.S.X.
0.5166.30.88At5g26700832719germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOAMO.I.H.G.S.X.
0.4862.50.88At4g34440829595protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.599.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.399.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.299.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.999.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.399.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
36.499.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.799.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.699.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.699.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.699.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.699.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.199.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.199.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.799.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.199.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.099.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.799.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.299.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.099.7GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
26.799.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.999.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.699.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.199.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.899.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.399.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
20.399.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.899.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.899.5GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.899.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
12.199.3GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.699.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.399.2GSM184892Arabidopsis, root cells, columella root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.999.0GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
8.799.0GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0544GO:0009860Growth of pollen via tip extension of the intine wall.Link to AmiGO
0.0342GO:0009225The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.Link to AmiGO
0.0292GO:0044237The chemical reactions and pathways by which individual cells transform chemical substances.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.033300500Starch and sucrose metabolismLink to KEGG PATHWAY
0.024200520Amino sugar and nucleotide sugar metabolismLink to KEGG PATHWAY
0.015100562Inositol phosphate metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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