Co-expression analysis

Gene ID At1g78180
Gene name binding
Module size 5 genes
NF 0.50
%ile 70.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4457.21.00At1g78180844154bindingF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.H.G.S.X.
0.7586.90.94At2g35155818082catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.5065.30.93At5g24000832465unknown proteinF:unknown;P:unknown;C:chloroplast;BOPAO.I.H.G.S.X.
0.4050.80.92At4g14510827098RNA bindingF:RNA binding;P:biological_process unknown;C:chloroplast;POMFBVAO.I.H.G.S.X.
0.4050.80.92At5g12150831088pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing proteinEncodes a protein with similarity to REN1, a Rho GTPase activating protein.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
66.199.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
38.899.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
32.899.7GSM131282AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
28.999.7E-ATMX-35-raw-cel-1574334832
27.499.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.299.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.199.6GSM131281AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
21.999.6GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
21.699.6GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.899.6E-ATMX-35-raw-cel-1574334800
20.599.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
20.099.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.099.6GSM131290AtGen_6-2222_Osmoticstress-Roots-1.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
19.499.6E-ATMX-35-raw-cel-1574334816
19.299.6GSM184932Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
19.299.6E-MEXP-475-raw-cel-680982449
18.699.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.599.5GSM184632Arabidopsis, whole roots, 140 mM NaCl, replicate 1GSE7636Expression analysis of the effect of protoplasting and FACS sorting in rootsLink to GEO
16.999.5GSM184846Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
15.999.5GSM218289At_NaCl_wermyb23-1GSE8787Expression analysis of the salt stress response in Arabidopsis mutants with defects in hair patterningLink to GEO
15.999.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.999.5GSM184845Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
15.099.4GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.999.4GSM131293AtGen_6-2321_Osmoticstress-Roots-3.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
14.599.4GSM184633Arabidopsis, whole roots, 140 mM NaCl, replicate 2GSE7636Expression analysis of the effect of protoplasting and FACS sorting in rootsLink to GEO
14.499.4GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.599.4GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.099.4GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.799.3GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
12.799.3GSM218290At_NaCl_wermyb23-2GSE8787Expression analysis of the salt stress response in Arabidopsis mutants with defects in hair patterningLink to GEO
12.399.3GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.199.3GSM184931Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 1GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
11.999.3GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.499.3GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.099.2GSM131289AtGen_6-2221_Osmoticstress-Roots-1.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
11.099.2GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
10.599.2GSM131182AtGen_D-14_1-AS_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
10.499.2GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
10.299.2GSM131330AtGen_6-3622_Saltstress-Roots-24.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
9.899.1GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.799.1GSM131294AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
9.699.1GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
9.699.1GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.099.1GSM142786HO001_ATH1_A3-Okamo-WS-ABAGSE6171Comparative transcriptome analysis between wild-type and gpa1 mutant in response to ABALink to GEO
8.999.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0561GO:0048316The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves.Link to AmiGO
0.0421GO:0006839Transport of substances into, out of or within a mitochondrion.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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