Co-expression analysis

Gene ID At1g76290
Gene name AMP-dependent synthetase and ligase family protein
Module size 86 genes
NF 0.89
%ile 98.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g76290843962AMP-dependent synthetase and ligase family proteinF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.H.G.S.X.
0.9797.60.94At2g39640818547glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.H.G.S.X.
0.9797.60.94At1g73560843690protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9797.60.98At2g03190814848ASK16 (ARABIDOPSIS SKP1-LIKE 16)one of SKP1 homologs. Gene is expressed specifically in the silique.O.I.H.G.S.X.
0.9797.60.96At5g05260830408CYP79A2 (CYTOCHROME P450 79A2)Encodes cytochrome P450 CYP79A2.O.I.H.G.S.X.
0.9797.60.95At1g80330844373GA3OX4 (GIBBERELLIN 3-OXIDASE 4)Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.O.I.H.G.S.X.
0.9697.30.96At4g37950829951lyaseF:lyase activity;P:biological_process unknown;C:unknown;PFBO.I.H.G.S.X.
0.9697.30.96At3g09140820068unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9597.00.94At3g03410821262calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.9597.00.92At3g24280822016SMAP2 (small acidic protein 2)F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO.I.H.G.S.X.
0.9597.00.95At4g17160827427ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVAO.I.H.G.S.X.
0.9597.00.94At5g0949083080840S ribosomal protein S15 (RPS15B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAFO.I.H.G.S.X.
0.9496.70.95At5g63740836494zinc finger protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAO.I.H.G.S.X.
0.9496.70.97At3g48950824056glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.H.G.S.X.
0.9496.70.95At4g18870827621heat shock transcription factor family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.9496.70.95At4g27890828902nuclear movement family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBO.I.H.G.S.X.
0.9496.70.94At2g42100818810actin, putativeF:protein binding, structural constituent of cytoskeleton, ATP binding;P:biological_process unknown;C:actin cytoskeleton;MFOPABVO.I.H.G.S.X.
0.9496.70.94At2g26320817172AGL33 (AGAMOUS-LIKE 33)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.9496.70.94At4g39000830055AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.H.G.S.X.
0.9396.40.92At1g20140838604ASK4 (ARABIDOPSIS SKP1-LIKE 4)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFVO.I.H.G.S.X.
0.9396.40.94At2g23990816933plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMAO.I.H.G.S.X.
0.9396.40.93At4g13080826922xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.H.G.S.X.
0.9396.40.94At1g60985842390SCRL6 (SCR-Like 6)Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).O.I.H.G.S.X.
0.9396.40.94At4g11510826756RALFL28 (ralf-like 28)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.H.G.S.X.
0.9296.00.92At5g39560833952-F:molecular_function unknown;P:unknown;C:chloroplast;MPOBVAFO.I.H.G.S.X.
0.9296.00.90At1g65300842838AGL38 (AGAMOUS-LIKE 38)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.H.G.S.X.
0.9296.00.92At3g05860819755MADS-box protein (AGL45)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.9296.00.94At3g01880821296unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBOO.I.H.G.S.X.
0.9296.00.96At1g02980839415CUL2 (CULLIN 2)encodes an Arabidopsis cullinO.I.H.G.S.X.
0.9195.60.93At3g25420822126scpl21 (serine carboxypeptidase-like 21)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.9195.60.88At5g38195833801protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9195.60.95At1g72580843590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9195.60.92At4g25610828666zinc finger (C2H2 type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPVO.I.H.G.S.X.
0.9195.60.90At1g16980838269ATTPS2Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.O.I.H.G.S.X.
0.9195.60.92At2g26870817228phosphoesterase family proteinF:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOAO.I.H.G.S.X.
0.9195.60.90At3g15490820788unknown proteinF:unknown;P:biological_process unknown;C:unknown;PFOMO.I.H.G.S.X.
0.9195.60.93At5g17470831613calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.H.G.S.X.
0.9195.60.91At1g48010841219invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9095.10.92At1g09510837476cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenaseO.I.H.G.S.X.
0.9095.10.93At4g34330829583unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.H.G.S.X.
0.9095.10.93At3g13370820537unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.9095.10.92At5g03920830271unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8994.60.89At1g75600843895histone H3.2, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.H.G.S.X.
0.8994.60.93At5g10230830887ANNAT7 (ANNEXIN ARABIDOPSIS 7)Encodes a calcium-binding protein annexin (AnnAt7).O.I.H.G.S.X.
0.8994.60.90At5g44830834513glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMAO.I.H.G.S.X.
0.8994.60.90At1g691908432502-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthaseencodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress.O.I.H.G.S.X.
0.8994.60.92At2g31760817733zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVO.I.H.G.S.X.
0.8994.60.86At5g10220830886ANN6 (ANNEXIN ARABIDOPSIS 6)Encodes a calcium-binding protein annexin (AnnAt6).O.I.H.G.S.X.
0.8994.60.90At2g30730817624serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.8994.60.93At4g15040827163identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAMO.I.H.G.S.X.
0.8894.00.87At4g39955830156hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:plasma membrane;BOMPAFO.I.H.G.S.X.
0.8894.00.89At2g20595816583unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8894.00.90At4g20200827766terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POFO.I.H.G.S.X.
0.8894.00.92At2g18490816364zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;POO.I.H.G.S.X.
0.8894.00.91At1g07690837282unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.8894.00.90At1g59800842273cullin-relatedF:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MFPOO.I.H.G.S.X.
0.8793.50.90At1g72000843531beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeF:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPBO.I.H.G.S.X.
0.8793.50.90At2g15325816022protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinPredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.H.G.S.X.
0.8793.50.91At4g24650828567ATIPT4AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cdsO.I.H.G.S.X.
0.8793.50.91At5g52140835290protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVBO.I.H.G.S.X.
0.8793.50.92At5g65370836662epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8693.10.90At5g2451083252260s acidic ribosomal protein P1, putativeF:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MFOPAO.I.H.G.S.X.
0.8693.10.90At3g42830823327ring-box protein Roc1/Rbx1/Hrt1, putativeF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPVO.I.H.G.S.X.
0.8693.10.90At3g66656819848AGL91F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.8693.10.92At3g27710822393zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVBO.I.H.G.S.X.
0.8693.10.92At3g05310819695MIRO3Encodes a protein with similarity to MIRO GTPases.O.I.H.G.S.X.
0.8592.40.92At1g57780842153heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBAFO.I.H.G.S.X.
0.8592.40.88At1g12190837772F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.8592.40.91At1g20730838663-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMVO.I.H.G.S.X.
0.8491.90.91At2g27700817316eukaryotic translation initiation factor 2 family protein / eIF-2 family proteinF:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAPO.I.H.G.S.X.
0.8491.90.87At2g42090818809ACT9 (ACTIN 9)actin related gene or pseudogene, based on sequence divergence and lack of expressionO.I.H.G.S.X.
0.8491.90.89At3g60700825241unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8391.40.86At1g51210841544UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMOBFVO.I.H.G.S.X.
0.8391.40.86At5g23650832430myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POBMO.I.H.G.S.X.
0.8391.40.86At2g23210816853UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PO.I.H.G.S.X.
0.8290.90.88At5g41450834146zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.H.G.S.X.
0.8290.90.87At4g36590829811MADS-box protein (AGL40)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.8190.40.88At5g53840835465F-box family protein (FBL13)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PO.I.H.G.S.X.
0.8190.40.86At1g51290841552F-box family protein (FBX10)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POO.I.H.G.S.X.
0.8190.40.89At5g66150836747glycosyl hydrolase family 38 proteinF:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:endomembrane system;MBOPFAO.I.H.G.S.X.
0.8089.80.89At1g65640842875DegP4 (DegP protease 4)Encodes a putative DegP protease.O.I.H.G.S.X.
0.8089.80.86At1g76720844006GTP binding / GTPase/ translation initiation factorF:GTP binding, GTPase activity, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.7989.10.87At1g28030839696oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:2-oxoglutarate-dependent dioxygenase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.H.G.S.X.
0.7989.10.89At1g10730837616clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.7586.90.87At2g31780817735protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVO.I.H.G.S.X.
0.7083.50.87At2g20160816536MEO (MEIDOS)F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
64.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
63.099.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
62.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
61.699.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
60.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
57.599.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
56.999.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
56.599.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
56.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
55.899.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
55.399.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
54.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
53.499.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
52.199.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.199.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
50.799.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.999.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
43.099.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
37.299.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
36.799.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
36.599.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.399.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.199.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.499.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.399.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.799.5GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.999.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
14.499.4E-ATMX-35-raw-cel-1574334800
13.999.4E-ATMX-35-raw-cel-1574334832
13.799.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.899.3GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
12.499.3GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
11.999.3GSM184481Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.599.3E-ATMX-35-raw-cel-1574334816
11.299.2E-NASC-76-raw-cel-1359878900
10.499.2GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.299.2GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
9.899.1GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
9.599.1GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
9.399.1GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.399.1E-NASC-76-raw-cel-1359878976
8.899.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
8.899.0GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0293GO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.Link to AmiGO
0.0272GO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.Link to AmiGO
0.0221GO:0006013The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.043404120Ubiquitin mediated proteolysisLink to KEGG PATHWAY
0.024200500Starch and sucrose metabolismLink to KEGG PATHWAY
0.021100511Other glycan degradationLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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