Co-expression analysis

Gene ID At1g75540
Gene name STH2 (SALT TOLERANCE HOMOLOG2)
Module size 5 genes
NF 0.18
%ile 15.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4050.81.00At1g75540843890STH2 (SALT TOLERANCE HOMOLOG2)F:transcription factor activity, zinc ion binding;P:unknown;C:intracellular;POMFO.I.H.G.S.X.
0.3235.70.85At3g52060824369unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.H.G.S.X.
0.2726.20.83At1g74840843823myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;POMO.I.H.G.S.X.
0.1811.40.83At3g01470821138ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.O.I.H.G.S.X.
0.103.40.86At3g48530824012KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;BOMAFPO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
113.899.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
107.099.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
100.299.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
94.999.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
90.899.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
79.399.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
75.899.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
70.699.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
67.699.9GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
66.799.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
66.099.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
65.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
60.299.8GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
58.999.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
54.199.8GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
45.399.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.999.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
40.199.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
37.299.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
35.799.7GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
26.899.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.999.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.599.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.399.6GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
22.299.6GSM142754MJ001_ATH1_A5-jones-WT-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
19.799.6GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
19.499.6GSM142674SF002_ATH1_A5-Fille-WTnodexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.Link to GEO
17.399.5GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
16.799.5E-ATMX-33-raw-cel-1562596197
16.799.5GSM184511Pericycle root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.399.5GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.799.5GSM184844Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
15.399.4GSM184843Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
15.099.4GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.199.4GSM184835Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
13.899.4GSM142670SF002_ATH1_A8-Fille-ANGR4-12+dexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.Link to GEO
13.299.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.099.4GSM133135S1500_24H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
12.599.3GSM184836Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
12.499.3GSM157314Hammond_3-4_Control-root_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
11.999.3GSM142675SF002_ATH1_A6-Fille-WT+dexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.Link to GEO
11.399.3GSM142730CH001_ATH1_A009-Hampt-wsc_repeatGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
11.399.3GSM142731CH001_ATH1_A010-Hampt-akcGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
11.299.2GSM158706WT-ESTRADIOL-REP2GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
11.299.2GSM265430Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
10.799.2GSM142669SF002_ATH1_A7-Fille-ANGR4-12nodexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.Link to GEO
10.399.2GSM184501Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.099.2GSM142672SF001_ATH1_A2-Fille-WT-+dexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.Link to GEO
9.099.1GSM142671SF001_ATH1_A1-Fille-WT-nodexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.Link to GEO
8.999.0E-MEXP-791-raw-cel-1122937623
8.699.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.699.0GSM142733CH001_ATH1_A012-Hampt-c1cGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0511GO:0009637A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.Link to AmiGO
0.0471GO:0045941Any process that activates or increases the frequency, rate or extent of transcription.Link to AmiGO
0.0381GO:0009965The process by which the anatomical structures of the leaf are generated and organized. Morphogenesis pertains to the creation of form.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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