Co-expression analysis

Gene ID At1g75280
Gene name isoflavone reductase, putative
Module size 26 genes
NF 0.07
%ile 4.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g75280843865isoflavone reductase, putativeisoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.O.I.H.G.S.X.
0.2217.50.76At1g65960842908GAD2 (GLUTAMATE DECARBOXYLASE 2)glutamate decarboxylase (GAD2)O.I.H.G.S.X.
0.2014.40.77At3g19000821433oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.H.G.S.X.
0.146.80.76At1g05850837095POM1 (POM-POM1)Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.O.I.H.G.S.X.
0.135.80.76At1g70730843410phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putativeF:intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity;P:response to cadmium ion, carbohydrate metabolic process;C:cytosol, nucleus, plasma membrane;BOMFPAO.I.H.G.S.X.
0.124.90.76At3g02720820875DJ-1 family protein / protease-relatedF:hydrolase activity, acting on glycosyl bonds;P:biological_process unknown;C:cellular_component unknown;BOAPMFO.I.H.G.S.X.
0.114.10.78At4g27430828851CIP7 (COP1-INTERACTING PROTEIN 7)Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.O.I.H.G.S.X.
0.114.10.77At3g08510819999ATPLC2 (PHOSPHOLIPASE C 2)Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.O.I.H.G.S.X.
0.114.10.76At5g05170830399CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis.O.I.H.G.S.X.
0.103.40.77At5g49970835061ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)encodes the bifunctional pyridoxine (pyridoxamine) 5-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group)O.I.H.G.S.X.
0.092.80.77At1g48420841263D-CDES (D-CYSTEINE DESULFHYDRASE)Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity.O.I.H.G.S.X.
0.082.30.77At1g15950838165CCR1 (CINNAMOYL COA REDUCTASE 1)Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.O.I.H.G.S.X.
0.082.30.76At3g24160822002PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)Encodes a putative Type 1 membrane protein (PMP).O.I.H.G.S.X.
0.082.30.78At1g19170838500glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:mitochondrion;FPBOMAO.I.H.G.S.X.
0.082.30.76At3g59300825099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOMO.I.H.G.S.X.
0.071.90.77At3g52880824454monodehydroascorbate reductase, putativeEncodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2O.I.H.G.S.X.
0.071.90.76At4g25660828671unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.071.90.76At5g46340834677O-acetyltransferase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.051.10.77At1g11840837731ATGLX1 (GLYOXALASE I HOMOLOG)Encodes a glyoxalase I homolog ATGLX1.O.I.H.G.S.X.
0.051.10.77At1g11090837650hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOPMFVAO.I.H.G.S.X.
0.040.90.76At5g52560835333ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE)Encodes a protein with UTP:sugar 1-phosphate uridylyltransferase activity, which has been shown to use a wide range of substrates including glucose-1-P, galactose-1-P, xylose-1-P, arabinose-1-P and glucuronate-1-P. The enzyme was shown to require Mg2+ or Mn2+ for activity.O.I.H.G.S.X.
0.040.90.76At1g31300840018-F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPOO.I.H.G.S.X.
0.040.90.77At3g04870819647ZDS (ZETA-CAROTENE DESATURASE)Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.O.I.H.G.S.X.
0.030.60.76At4g17890827512AGD8 (ARF-GAP DOMAIN 8)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.O.I.H.G.S.X.
0.030.60.76At2g47070819321SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA.O.I.H.G.S.X.
0.020.40.76At5g13810831226glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;POMBFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
96.799.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
65.999.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
57.399.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
53.999.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.099.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.599.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.699.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.799.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.499.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.699.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.199.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.799.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.499.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.999.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.499.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.099.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.999.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.999.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.299.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.799.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.399.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.699.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.799.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.599.6GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
16.499.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
16.299.5GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
16.099.5GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
14.799.4GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
13.999.4GSM242962Mock day 7 (day7E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
13.499.4GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
13.299.4GSM242961Mock day 7 (day7E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
12.999.3GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.799.2GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
10.799.2GSM242953Mock day 1 (day1E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
9.799.1GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.599.1GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.199.1E-MEXP-807-raw-cel-1173273252

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0741GO:0042817The chemical reactions and pathways involving 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.Link to AmiGO
0.0671GO:0009833The chemical reactions and pathways resulting in the formation of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana.Link to AmiGO
0.0651GO:0006536The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.044100640Propanoate metabolismLink to KEGG PATHWAY
0.042100906Carotenoid biosynthesisLink to KEGG PATHWAY
0.041200520Amino sugar and nucleotide sugar metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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