CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g74160

Gene name unknown protein

Module size 54 genes

NF 0.30

%ile 37.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At1g74160 843756 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. H.G. S.X.
0.44 57.2 0.90 At5g27970 832867 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. H.G. S.X.
0.44 57.2 0.88 At3g25500 822136 AFH1 (FORMIN HOMOLOGY 1) Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event. O.I. H.G. S.X.
0.42 53.9 0.89 At3g07180 819905 GPI transamidase component PIG-S-related F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MFPO O.I. H.G. S.X.
0.40 50.8 0.90 At1g54610 841903 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA O.I. H.G. S.X.
0.39 48.4 0.89 At1g22060 838811 - F:unknown;P:unknown;C:vacuole;MOBFPAV O.I. H.G. S.X.
0.38 46.7 0.90 At1g53050 841739 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA O.I. H.G. S.X.
0.38 46.7 0.90 At5g13980 831246 glycosyl hydrolase family 38 protein F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall;MOPBFA O.I. H.G. S.X.
0.37 45.0 0.89 At5g38880 833879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPA O.I. H.G. S.X.
0.36 43.6 0.89 At1g65010 842809 unknown protein F:unknown;P:unknown;C:chloroplast;MOBFPAV O.I. H.G. S.X.
0.36 43.6 0.90 At4g16650 827366 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;P O.I. H.G. S.X.
0.36 43.6 0.89 At2g38440 818425 SCAR2 (SCAR HOMOLOG 2) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype. O.I. H.G. S.X.
0.36 43.6 0.90 At3g12010 820375 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOP O.I. H.G. S.X.
0.35 41.6 0.88 At5g22760 832339 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFO O.I. H.G. S.X.
0.35 41.6 0.89 At1g10870 837629 AGD4 (ARF-GAP domain 4) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3. O.I. H.G. S.X.
0.35 41.6 0.89 At2g15530 816045 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV O.I. H.G. S.X.
0.35 41.6 0.88 At5g58440 835957 SNX2a (SORTING NEXIN 2a) F:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:cellular_component unknown;MFOPAB O.I. H.G. S.X.
0.35 41.6 0.89 At1g16680 838237 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.34 39.8 0.90 At2g32950 817857 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. O.I. H.G. S.X.
0.34 39.8 0.88 At2g46560 819268 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOP O.I. H.G. S.X.
0.33 38.1 0.89 At1g05150 839312 calcium-binding EF hand family protein F:binding, zinc ion binding, calcium ion binding;P:biological_process unknown;C:plasma membrane;BOMAPF O.I. H.G. S.X.
0.33 38.1 0.89 At4g34040 829550 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV O.I. H.G. S.X.
0.32 35.7 0.89 At2g36720 818244 PHD finger transcription factor, putative F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. H.G. S.X.
0.32 35.7 0.90 At3g51310 824294 VPS35C (VPS35 HOMOLOG C) Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. O.I. H.G. S.X.
0.32 35.7 0.88 At3g61690 825342 unknown protein F:unknown;P:unknown;C:unknown;OMPFB O.I. H.G. S.X.
0.32 35.7 0.88 At4g39680 830123 SAP domain-containing protein F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVA O.I. H.G. S.X.
0.31 33.8 0.88 At1g60220 842317 ULP1D (UB-LIKE PROTEASE 1D) Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP:OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S:OTS1 increases salt tolerance and reduces the level of SUMO-conjugated proteins. OTS1 transcript levels do not appear to change in response to salt, but, salt stress reduces the level of OTS1 protein in a proteasome-dependent manner. O.I. H.G. S.X.
0.31 33.8 0.88 At4g32620 829397 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPMFB O.I. H.G. S.X.
0.31 33.8 0.89 At1g74690 843808 IQD31 (IQ-domain 31) F:calmodulin binding;P:biological_process unknown;C:cytosol, plasma membrane;MOFPBVA O.I. H.G. S.X.
0.31 33.8 0.89 At3g16060 820851 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:nucleus, plasma membrane;MOPFB O.I. H.G. S.X.
0.30 32.1 0.89 At2g05230 815071 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV O.I. H.G. S.X.
0.29 30.3 0.88 At1g02080 839244 transcriptional regulator-related F:transcription regulator activity;P:unknown;C:membrane;MOFBP O.I. H.G. S.X.
0.28 30.3 0.91 At3g06650 819845 ACLB-1 One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase O.I. H.G. S.X.
0.28 30.3 0.89 At3g55480 824714 adaptin family protein F:protein binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system;BMFOP O.I. H.G. S.X.
0.28 30.3 0.89 At3g15120 820743 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAV O.I. H.G. S.X.
0.27 26.2 0.88 At4g14920 827150 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. H.G. S.X.
0.27 26.2 0.88 At4g17330 827445 ATG2484-1 gene of unknown function expressed in seedlings, flower buds and stems O.I. H.G. S.X.
0.27 26.2 0.88 At3g22520 821823 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;OMBFPA O.I. H.G. S.X.
0.27 26.2 0.89 At1g73450 843680 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA O.I. H.G. S.X.
0.26 24.4 0.89 At3g26560 822264 ATP-dependent RNA helicase, putative F:in 6 functions;P:unknown;C:cytosol, mitochondrion;MOBFPVA O.I. H.G. S.X.
0.25 22.6 0.88 At5g16280 831488 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;MFOPV O.I. H.G. S.X.
0.25 22.6 0.90 At1g55130 841956 endomembrane protein 70, putative F:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFB O.I. H.G. S.X.
0.24 20.7 0.88 At3g60240 825194 - - O.I. H.G. S.X.
0.23 19.3 0.89 At1g60070 842301 binding / clathrin binding / protein binding / protein transporter F:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:membrane coat, Golgi apparatus part, Golgi apparatus, clathrin adaptor complex;MFOPB O.I. H.G. S.X.
0.23 19.3 0.89 At1g76850 844020 SEC5A (EXOCYST COMPLEX COMPONENT SEC5) F:molecular_function unknown;P:pollen germination, pollen tube growth;C:cytosol, plasma membrane;MFPOVB O.I. H.G. S.X.
0.22 17.5 0.88 At2g26770 817218 plectin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. H.G. S.X.
0.22 17.5 0.89 At5g28850 833004 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPF O.I. H.G. S.X.
0.21 15.8 0.88 At4g38200 829976 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:chloroplast;MFOPB O.I. H.G. S.X.
0.20 14.4 0.88 At1g12820 837838 AFB3 (AUXIN SIGNALING F-BOX 3) F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOB O.I. H.G. S.X.
0.20 14.4 0.88 At3g08680 820015 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, plant-type cell wall;PMOBFVA O.I. H.G. S.X.
0.18 11.4 0.88 At5g63840 836504 RSW3 (RADIAL SWELLING 3) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme. O.I. H.G. S.X.
0.17 10.2 0.88 At4g09630 826549 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVA O.I. H.G. S.X.
0.15 7.8 0.88 At5g35360 833497 CAC2 Encodes biotin carboxylase subunit (CAC2). O.I. H.G. S.X.
0.11 4.1 0.88 At1g05500 837052 NTMC2T2.1 F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At1g74160	843756	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	H.G.	S.X.
0.44	57.2	0.90	At5g27970	832867	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	H.G.	S.X.
0.44	57.2	0.88	At3g25500	822136	AFH1 (FORMIN HOMOLOGY 1)	Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event.	O.I.	H.G.	S.X.
0.42	53.9	0.89	At3g07180	819905	GPI transamidase component PIG-S-related	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MFPO	O.I.	H.G.	S.X.
0.40	50.8	0.90	At1g54610	841903	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA	O.I.	H.G.	S.X.
0.39	48.4	0.89	At1g22060	838811	-	F:unknown;P:unknown;C:vacuole;MOBFPAV	O.I.	H.G.	S.X.
0.38	46.7	0.90	At1g53050	841739	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA	O.I.	H.G.	S.X.
0.38	46.7	0.90	At5g13980	831246	glycosyl hydrolase family 38 protein	F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall;MOPBFA	O.I.	H.G.	S.X.
0.37	45.0	0.89	At5g38880	833879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPA	O.I.	H.G.	S.X.
0.36	43.6	0.89	At1g65010	842809	unknown protein	F:unknown;P:unknown;C:chloroplast;MOBFPAV	O.I.	H.G.	S.X.
0.36	43.6	0.90	At4g16650	827366	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;P	O.I.	H.G.	S.X.
0.36	43.6	0.89	At2g38440	818425	SCAR2 (SCAR HOMOLOG 2)	Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype.	O.I.	H.G.	S.X.
0.36	43.6	0.90	At3g12010	820375	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOP	O.I.	H.G.	S.X.
0.35	41.6	0.88	At5g22760	832339	PHD finger family protein	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFO	O.I.	H.G.	S.X.
0.35	41.6	0.89	At1g10870	837629	AGD4 (ARF-GAP domain 4)	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.	O.I.	H.G.	S.X.
0.35	41.6	0.89	At2g15530	816045	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV	O.I.	H.G.	S.X.
0.35	41.6	0.88	At5g58440	835957	SNX2a (SORTING NEXIN 2a)	F:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:cellular_component unknown;MFOPAB	O.I.	H.G.	S.X.
0.35	41.6	0.89	At1g16680	838237	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	H.G.	S.X.
0.34	39.8	0.90	At2g32950	817857	COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)	Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.	O.I.	H.G.	S.X.
0.34	39.8	0.88	At2g46560	819268	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOP	O.I.	H.G.	S.X.
0.33	38.1	0.89	At1g05150	839312	calcium-binding EF hand family protein	F:binding, zinc ion binding, calcium ion binding;P:biological_process unknown;C:plasma membrane;BOMAPF	O.I.	H.G.	S.X.
0.33	38.1	0.89	At4g34040	829550	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV	O.I.	H.G.	S.X.
0.32	35.7	0.89	At2g36720	818244	PHD finger transcription factor, putative	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	H.G.	S.X.
0.32	35.7	0.90	At3g51310	824294	VPS35C (VPS35 HOMOLOG C)	Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	O.I.	H.G.	S.X.
0.32	35.7	0.88	At3g61690	825342	unknown protein	F:unknown;P:unknown;C:unknown;OMPFB	O.I.	H.G.	S.X.
0.32	35.7	0.88	At4g39680	830123	SAP domain-containing protein	F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVA	O.I.	H.G.	S.X.
0.31	33.8	0.88	At1g60220	842317	ULP1D (UB-LIKE PROTEASE 1D)	Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP:OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S:OTS1 increases salt tolerance and reduces the level of SUMO-conjugated proteins. OTS1 transcript levels do not appear to change in response to salt, but, salt stress reduces the level of OTS1 protein in a proteasome-dependent manner.	O.I.	H.G.	S.X.
0.31	33.8	0.88	At4g32620	829397	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPMFB	O.I.	H.G.	S.X.
0.31	33.8	0.89	At1g74690	843808	IQD31 (IQ-domain 31)	F:calmodulin binding;P:biological_process unknown;C:cytosol, plasma membrane;MOFPBVA	O.I.	H.G.	S.X.
0.31	33.8	0.89	At3g16060	820851	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:nucleus, plasma membrane;MOPFB	O.I.	H.G.	S.X.
0.30	32.1	0.89	At2g05230	815071	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV	O.I.	H.G.	S.X.
0.29	30.3	0.88	At1g02080	839244	transcriptional regulator-related	F:transcription regulator activity;P:unknown;C:membrane;MOFBP	O.I.	H.G.	S.X.
0.28	30.3	0.91	At3g06650	819845	ACLB-1	One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase	O.I.	H.G.	S.X.
0.28	30.3	0.89	At3g55480	824714	adaptin family protein	F:protein binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system;BMFOP	O.I.	H.G.	S.X.
0.28	30.3	0.89	At3g15120	820743	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAV	O.I.	H.G.	S.X.
0.27	26.2	0.88	At4g14920	827150	DNA binding / protein binding / zinc ion binding	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	H.G.	S.X.
0.27	26.2	0.88	At4g17330	827445	ATG2484-1	gene of unknown function expressed in seedlings, flower buds and stems	O.I.	H.G.	S.X.
0.27	26.2	0.88	At3g22520	821823	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;OMBFPA	O.I.	H.G.	S.X.
0.27	26.2	0.89	At1g73450	843680	protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA	O.I.	H.G.	S.X.
0.26	24.4	0.89	At3g26560	822264	ATP-dependent RNA helicase, putative	F:in 6 functions;P:unknown;C:cytosol, mitochondrion;MOBFPVA	O.I.	H.G.	S.X.
0.25	22.6	0.88	At5g16280	831488	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;MFOPV	O.I.	H.G.	S.X.
0.25	22.6	0.90	At1g55130	841956	endomembrane protein 70, putative	F:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFB	O.I.	H.G.	S.X.
0.24	20.7	0.88	At3g60240	825194	-	-	O.I.	H.G.	S.X.
0.23	19.3	0.89	At1g60070	842301	binding / clathrin binding / protein binding / protein transporter	F:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:membrane coat, Golgi apparatus part, Golgi apparatus, clathrin adaptor complex;MFOPB	O.I.	H.G.	S.X.
0.23	19.3	0.89	At1g76850	844020	SEC5A (EXOCYST COMPLEX COMPONENT SEC5)	F:molecular_function unknown;P:pollen germination, pollen tube growth;C:cytosol, plasma membrane;MFPOVB	O.I.	H.G.	S.X.
0.22	17.5	0.88	At2g26770	817218	plectin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	H.G.	S.X.
0.22	17.5	0.89	At5g28850	833004	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPF	O.I.	H.G.	S.X.
0.21	15.8	0.88	At4g38200	829976	guanine nucleotide exchange family protein	F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:chloroplast;MFOPB	O.I.	H.G.	S.X.
0.20	14.4	0.88	At1g12820	837838	AFB3 (AUXIN SIGNALING F-BOX 3)	F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOB	O.I.	H.G.	S.X.
0.20	14.4	0.88	At3g08680	820015	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, plant-type cell wall;PMOBFVA	O.I.	H.G.	S.X.
0.18	11.4	0.88	At5g63840	836504	RSW3 (RADIAL SWELLING 3)	radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.	O.I.	H.G.	S.X.
0.17	10.2	0.88	At4g09630	826549	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVA	O.I.	H.G.	S.X.
0.15	7.8	0.88	At5g35360	833497	CAC2	Encodes biotin carboxylase subunit (CAC2).	O.I.	H.G.	S.X.
0.11	4.1	0.88	At1g05500	837052	NTMC2T2.1	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.5 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.4 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
43.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.8 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.6 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.1 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.9 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
40.6 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.4 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.0 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.4 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.9 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.5 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.5 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.9 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.3 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.5 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.1 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.4 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.7 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.5 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.6 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.1 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.7 99.6 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.7 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.4 99.6 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
20.1 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.3 99.4 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.5 99.2 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
9.6 99.1 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
8.9 99.0 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
47.5	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.4	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
43.8	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.8	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.6	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.1	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.9	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
40.6	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.4	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.0	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.4	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.9	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.5	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.5	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.9	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.3	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.5	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.1	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.4	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.7	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
27.5	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.6	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.1	99.6	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.7	99.6	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.7	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
20.4	99.6	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
20.1	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.3	99.4	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.5	99.2	GSM184917	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
9.6	99.1	GSM270814	Arabidopsis cell culture, 4 h_control_rep1	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
8.9	99.0	GSM134301	Penfield_1-3_endosperm-control_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.048 2 GO:0030036 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
0.036 1 GO:0016337 The attachment of one cell to another cell via adhesion molecules.
0.035 1 GO:0006013 The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins.

SF	Genes	GO ID	Process Name
0.048	2	GO:0030036	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
0.036	1	GO:0016337	The attachment of one cell to another cell via adhesion molecules.
0.035	1	GO:0006013	The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.023 1 00052 Galactose metabolism
0.020 1 03018 RNA degradation
0.017 1 00020 Citrate cycle (TCA cycle)

SF	Genes	KEGG ID	Pathway name
0.023	1	00052	Galactose metabolism
0.020	1	03018	RNA degradation
0.017	1	00020	Citrate cycle (TCA cycle)

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g74160
Gene name	unknown protein
Module size	54 genes
NF	0.30
%ile	37.3

Co-expression analysis

Gene ID At1g74160 Gene name unknown protein Module size 54 genes NF 0.30 %ile 37.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.023100052Galactose metabolism0.020103018RNA degradation0.017100020Citrate cycle (TCA cycle)

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g74160

Gene name unknown protein

Module size 54 genes

NF 0.30

%ile 37.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.023 1 00052 Galactose metabolism
0.020 1 03018 RNA degradation
0.017 1 00020 Citrate cycle (TCA cycle)

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays