CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g70740

Gene name protein kinase family protein

Module size 5 genes

NF 0.47

%ile 66.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.57 73.8 1.00 At1g70740 843411 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.67 81.6 0.88 At1g27770 839670 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor. O.I. H.G. S.X.
0.46 59.8 0.87 At2g26190 817159 calmodulin-binding family protein F:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOB O.I. H.G. S.X.
0.40 50.8 0.92 At4g01090 827898 extra-large G-protein-related F:unknown;P:unknown;C:unknown;MPFOBV O.I. H.G. S.X.
0.33 38.1 0.88 At1g19770 838565 ATPUP14 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.57	73.8	1.00	At1g70740	843411	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	H.G.	S.X.
0.67	81.6	0.88	At1g27770	839670	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.	O.I.	H.G.	S.X.
0.46	59.8	0.87	At2g26190	817159	calmodulin-binding family protein	F:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOB	O.I.	H.G.	S.X.
0.40	50.8	0.92	At4g01090	827898	extra-large G-protein-related	F:unknown;P:unknown;C:unknown;MPFOBV	O.I.	H.G.	S.X.
0.33	38.1	0.88	At1g19770	838565	ATPUP14	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
137.4 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.9 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
55.9 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.8 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.6 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
49.4 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.3 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.1 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.0 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.9 99.8 GSM131375 AtGen_6-5511_Genotoxicstress-Shoots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
42.8 99.8 GSM131373 AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
41.3 99.8 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8 99.8 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
37.1 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.8 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
33.9 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.2 99.7 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.7 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.4 99.7 GSM131369 AtGen_6-5321_Genotoxicstress-Roots-3.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
26.4 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.0 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.6 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.2 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.0 99.6 GSM131377 AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
23.5 99.6 GSM131382 AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
21.5 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.5 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.6 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.4 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.4 99.6 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
19.1 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.9 99.5 GSM131376 AtGen_6-5512_Genotoxicstress-Shoots-12.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
17.4 99.5 GSM131372 AtGen_6-5412_Genotoxicstress-Shoots-6.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
14.9 99.4 GSM131370 AtGen_6-5322_Genotoxicstress-Roots-3.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
13.4 99.4 Evans_2-2_col-WT-cold_ATH1
11.9 99.3 GSM131378 AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
11.9 99.3 Evans_2-8_35s-FAD3-cold_ATH1
11.6 99.3 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.5 99.3 Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1
11.4 99.3 Evans_2-4_fab1-mut-cold_ATH1
11.4 99.3 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.2 99.2 GSM131381 AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
9.8 99.1 GSM131374 AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
9.7 99.1 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.7 99.1 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.4 99.1 GSM226553 Slice11JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.3 99.1 Evans_2-10_col-aeq-cold_ATH1
9.0 99.1 GSM226542 L12SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
137.4	99.9	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
60.9	99.8	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
55.9	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.8	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.6	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
49.4	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.3	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.1	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.0	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.9	99.8	GSM131375	AtGen_6-5511_Genotoxicstress-Shoots-12.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
42.8	99.8	GSM131373	AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
41.3	99.8	GSM133759	Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.8	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8	99.8	GSM133945	Murray_2-1_T0-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
37.1	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
34.8	99.7	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
33.9	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.2	99.7	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.7	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.4	99.7	GSM131369	AtGen_6-5321_Genotoxicstress-Roots-3.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
26.4	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.0	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.6	99.6	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.2	99.6	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.0	99.6	GSM131377	AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
23.5	99.6	GSM131382	AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
21.5	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.5	99.6	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.6	99.6	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.4	99.6	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.4	99.6	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
19.1	99.6	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.9	99.5	GSM131376	AtGen_6-5512_Genotoxicstress-Shoots-12.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
17.4	99.5	GSM131372	AtGen_6-5412_Genotoxicstress-Shoots-6.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
14.9	99.4	GSM131370	AtGen_6-5322_Genotoxicstress-Roots-3.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
13.4	99.4	Evans_2-2_col-WT-cold_ATH1
11.9	99.3	GSM131378	AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
11.9	99.3	Evans_2-8_35s-FAD3-cold_ATH1
11.6	99.3	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.5	99.3	Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1
11.4	99.3	Evans_2-4_fab1-mut-cold_ATH1
11.4	99.3	GSM133773	Lindsey_1-25_torpedo-meristem_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.2	99.2	GSM131381	AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
9.8	99.1	GSM131374	AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
9.7	99.1	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.7	99.1	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.4	99.1	GSM226553	Slice11JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.3	99.1	Evans_2-10_col-aeq-cold_ATH1
9.0	99.1	GSM226542	L12SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.091 1 GO:0006816 The directed movement of calcium (Ca) ions into, out of, within or between cells.
0.074 1 GO:0006863 The directed movement of purines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells.
0.054 1 GO:0006754 The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

SF	Genes	GO ID	Process Name
0.091	1	GO:0006816	The directed movement of calcium (Ca) ions into, out of, within or between cells.
0.074	1	GO:0006863	The directed movement of purines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells.
0.054	1	GO:0006754	The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g70740
Gene name	protein kinase family protein
Module size	5 genes
NF	0.47
%ile	66.6

Co-expression analysis

Gene ID At1g70740 Gene name protein kinase family protein Module size 5 genes NF 0.47 %ile 66.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g70740

Gene name protein kinase family protein

Module size 5 genes

NF 0.47

%ile 66.6

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays