Co-expression analysis

Gene ID At1g70190
Gene name ribosomal protein L12 family protein
Module size 30 genes
NF 0.42
%ile 59.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5974.71.00At1g70190843355ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:mitochondrion, large ribosomal subunit;BOPMFO.I.H.G.S.X.
0.6781.60.94At4g39880830147ribosomal protein L23 family proteinF:structural constituent of ribosome, nucleotide binding;P:translation, ribosome biogenesis;C:ribosome;BOPMO.I.H.G.S.X.
0.5773.80.93At2g1736081624340S ribosomal protein S4 (RPS4A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, plasma membrane, chloroplast;MOAFPO.I.H.G.S.X.
0.5773.80.94At1g30580839938GTP bindingF:GTP binding;P:response to cadmium ion;C:intracellular;OBMFAPO.I.H.G.S.X.
0.5673.00.94At1g3312084020860S ribosomal protein L9 (RPL90B)F:structural constituent of ribosome;P:translation;C:in 7 components;MPAOBFO.I.H.G.S.X.
0.5469.50.93At5g3974083397060S ribosomal protein L5 (RPL5B)F:structural constituent of ribosome, 5S rRNA binding;P:translation, ribosome biogenesis;C:in 6 components;MAOFPBO.I.H.G.S.X.
0.5166.30.94At4g18730827607RPL16Bencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expression in lateral root primordia is induced by auxin.O.I.H.G.S.X.
0.5166.30.93At5g02740831811nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.4558.30.94At2g4412081901860S ribosomal protein L7 (RPL7C)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 7 components;MOAFPO.I.H.G.S.X.
0.4457.20.93At3g51010824265unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;PO.I.H.G.S.X.
0.4457.20.93At5g49510835011PDF3 (PREFOLDIN 3)F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPO.I.H.G.S.X.
0.4457.20.94At4g34870829639ROC5 (ROTAMASE CYCLOPHILIN 5)belongs to cyclophilin familyO.I.H.G.S.X.
0.4355.30.94At2g45640819172SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo.O.I.H.G.S.X.
0.4355.30.93At5g20920832216EIF2 BETAprotein synthesis initiation factor eIF2 betaO.I.H.G.S.X.
0.4253.90.93At3g25520822138ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.O.I.H.G.S.X.
0.4253.90.93At2g3161081771940S ribosomal protein S3 (RPS3A)F:structural constituent of ribosome;P:response to salt stress, translation, response to abiotic stimulus;C:in 6 components;BOMAPFO.I.H.G.S.X.
0.4152.40.94At2g39990818587EIF2translation initiation factor eIF2 p47 subunit homologO.I.H.G.S.X.
0.4050.80.94At3g0492081965240S ribosomal protein S24 (RPS24A)F:structural constituent of ribosome, nucleotide binding;P:translation, ribosome biogenesis;C:in 7 components;MOFPAO.I.H.G.S.X.
0.3948.40.93At1g10840837627TIF3H1Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).O.I.H.G.S.X.
0.3846.70.93At1g04170839238EIF2 GAMMAprotein synthesis initiation factor eIF2 gammaO.I.H.G.S.X.
0.3745.00.93At3g4991082415360S ribosomal protein L26 (RPL26A)F:structural constituent of ribosome;P:response to cold, translation;C:in 8 components;MAOFPBO.I.H.G.S.X.
0.3643.60.93At2g3337081790060S ribosomal protein L23 (RPL23B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus;BOPMAFO.I.H.G.S.X.
0.3643.60.93At5g11170830986ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:response to cadmium ion;C:nucleolus;BOMFPAVO.I.H.G.S.X.
0.3541.60.93At2g27530817299PGY1 (PIGGYBACK1)Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.O.I.H.G.S.X.
0.3541.60.93At3g5343082451160S ribosomal protein L12 (RPL12B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, membrane;MBAOFPO.I.H.G.S.X.
0.3541.60.94At4g33250829461EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)Encodes initiation factor 3k (EIF3k).O.I.H.G.S.X.
0.3338.10.93At3g16480820896MPPalpha (mitochondrial processing peptidase alpha subunit)F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 8 components;BOMFPAVO.I.H.G.S.X.
0.3338.10.93At5g5985083610740S ribosomal protein S15A (RPS15aF)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cell wall, membrane;BOMAPFO.I.H.G.S.X.
0.3235.70.93At1g02140837560MAGO (MAGO NASHI)F:protein binding;P:embryonic development ending in seed dormancy, pollen tube guidance, sex determination;C:in 6 components;MFOPO.I.H.G.S.X.
0.3032.10.93At2g4761081937460S ribosomal protein L7A (RPL7aA)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, nucleolus, plasma membrane, chloroplast;MOFAPO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
85.199.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
71.999.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
64.099.8GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
52.299.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
49.299.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
48.499.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
46.499.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
33.099.7GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
31.499.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.399.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.199.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.299.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.899.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.599.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.399.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.099.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.099.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.899.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.699.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.999.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.899.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.699.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.299.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.099.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.299.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.099.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.499.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.099.5E-MEXP-807-raw-cel-1173273116
16.699.5E-MEXP-807-raw-cel-1173273196
16.599.5E-MEXP-807-raw-cel-1173273088
15.399.4GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.399.4E-MEXP-807-raw-cel-1173273170
14.099.4GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
13.899.4E-MEXP-807-raw-cel-1173273223
11.799.3E-MEXP-807-raw-cel-1173273060
10.999.2GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.599.2GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
10.299.2GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.099.2GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
9.899.1E-MEXP-1138-raw-cel-1432773098
9.599.1GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
9.399.1E-MEXP-1138-raw-cel-1432773130
9.199.1E-MEXP-285-raw-cel-440782791

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1142GO:0009955The regionalization process by which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.Link to AmiGO
0.0794GO:0006413The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.Link to AmiGO
0.0725GO:0042254The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.069903010RibosomeLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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