Co-expression analysis

Gene ID At1g69040
Gene name ACR4 (ACT REPEAT 4)
Module size 6 genes
NF 0.30
%ile 37.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g69040843236ACR4 (ACT REPEAT 4)ACT-domain containing protein involved in feedback regulation of amino acid metabolismO.I.H.G.S.X.
0.3643.60.84At1g31860840076AT-IEencodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.O.I.H.G.S.X.
0.2930.30.84At1g16920838263ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.O.I.H.G.S.X.
0.2217.50.85At1g04190839442tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OBMPFAO.I.H.G.S.X.
0.157.80.86At5g62690836390TUB2encodes tubulin beta-2/beta-3 chainO.I.H.G.S.X.
0.092.80.84At4g26300828736emb1027 (embryo defective 1027)F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.299.9GSM184484Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
65.699.8GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
60.999.8GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
37.599.7GSM184483Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
37.099.7GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
33.799.7GSM62698arf6/arf6 ARF8/arf8 flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
26.299.7GSM62694Columbia flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
24.499.6GSM184481Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.099.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.599.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.099.6GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.099.6E-MEXP-849-raw-cel-1181980942
21.699.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.999.6GSM131580ATGE_32_B2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
20.699.6GSM131579ATGE_32_A2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
20.399.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
20.399.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
20.199.6GSM128732Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
19.999.6GSM184479Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.799.6E-MEXP-849-raw-cel-1181980966
19.699.6GSM131581ATGE_32_C2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
19.499.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.099.5GSM47019Ler 9GSE2473Small RNA biogenesis mutantsLink to GEO
18.999.5GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.899.5E-MEXP-849-raw-cel-1181980894
18.899.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.599.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.599.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.199.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.799.5E-MEXP-849-raw-cel-1181980950
17.799.5E-MEXP-1592-raw-cel-1617526944
17.499.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.299.5GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.299.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.999.5E-MEXP-849-raw-cel-1181980934
16.999.5GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.799.5GSM131639ATGE_92_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
16.599.5GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.499.5GSM131640ATGE_92_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
15.499.5GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
15.499.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
15.299.4GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
15.299.4E-MEXP-1592-raw-cel-1617526976
15.099.4GSM131641ATGE_92_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
14.599.4GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.199.4GSM62702arf6 arf8 flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
14.099.4GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.099.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.899.4E-MEXP-1592-raw-cel-1617526848
13.699.4GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.599.4E-MEXP-849-raw-cel-1181980974
13.599.4GSM131621ATGE_55_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
13.399.4E-MEXP-849-raw-cel-1181980902
12.999.3GSM131623ATGE_55_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
12.799.3GSM131622ATGE_55_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
12.599.3E-MEXP-849-raw-cel-1181980958
11.499.3E-MEXP-1592-raw-cel-1617526912
10.999.2E-MEXP-849-raw-cel-1181980910
10.599.2GSM133752Turner_A-6-Turne-WT-Top2_SLDGSE5729Role of COV in vascular patterningLink to GEO
9.699.1GSM142754MJ001_ATH1_A5-jones-WT-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
9.699.1E-MEXP-849-raw-cel-1181980918
9.599.1E-MEXP-1592-raw-cel-1617526880
9.499.1GSM133751Turner_A-5-Turne-WT-Top1_SLDGSE5729Role of COV in vascular patterningLink to GEO
9.499.1GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.199.1GSM133747Turner_A-1-Turne-Mut-Top1_SLDGSE5729Role of COV in vascular patterningLink to GEO
9.099.1GSM128729Hennig_1-1_flower-buds-CK_021114_1_A_Rep1_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
8.899.0E-MEXP-849-raw-cel-1181980886
8.799.0GSM133748Turner_A-2-Turne-Mut-Top2_SLDGSE5729Role of COV in vascular patterningLink to GEO
8.799.0GSM142730CH001_ATH1_A009-Hampt-wsc_repeatGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0006521Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids.Link to AmiGO
0.2501GO:0006420The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.Link to AmiGO
0.1331GO:0000105The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.100100340Histidine metabolismLink to KEGG PATHWAY
0.038100970Aminoacyl-tRNA biosynthesisLink to KEGG PATHWAY
0.002101100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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