Co-expression analysis

Gene ID At1g68640
Gene name PAN (PERIANTHIA)
Module size 9 genes
NF 0.43
%ile 60.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2217.51.00At1g68640843194PAN (PERIANTHIA)Encodes bZIP-transcription factor. Mutant plants have extra floral organs.O.I.H.G.S.X.
0.7184.20.59At2g07696815372ribosomal protein S7 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, small ribosomal subunit, intracellular;BOPMAFO.I.H.G.S.X.
0.7184.20.57At2g20710816599pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POFMBO.I.H.G.S.X.
0.6781.60.61At3g49710824133pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.6781.60.62At5g44150834438unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOO.I.H.G.S.X.
0.5974.70.57At1g55460841993Kin17 DNA-binding protein-relatedF:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBVAO.I.H.G.S.X.
0.5773.80.61At3g21430821697--O.I.H.G.S.X.
0.2830.30.62At1g31760840063SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFMVO.I.H.G.S.X.
0.2830.30.58At2g20480816568unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
101.599.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
98.199.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
87.699.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
82.299.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
80.999.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
80.699.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
79.499.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
78.699.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
78.399.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
76.999.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
76.599.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
73.799.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
72.699.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
72.499.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
70.599.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
68.299.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
67.799.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
65.499.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
61.899.8GSM216981Vector_shoots_4h_GA4+DEX_repl2GSE8741DELLA protein direct targets in ArabidopsisLink to GEO
56.899.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
53.699.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
52.799.8E-ATMX-35-raw-cel-1574334832
52.799.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
49.099.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
48.599.8GSM216973Vector_shoots_4h_GA4+DEX_repl1GSE8741DELLA protein direct targets in ArabidopsisLink to GEO
43.899.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
41.099.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.199.7E-ATMX-35-raw-cel-1574334816
31.399.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.599.7E-ATMX-35-raw-cel-1574334800
23.699.6GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
23.599.6GSM47019Ler 9GSE2473Small RNA biogenesis mutantsLink to GEO
20.899.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.599.6E-MEXP-1592-raw-cel-1617526848
20.199.6GSM47018Ler 8GSE2473Small RNA biogenesis mutantsLink to GEO
17.999.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
17.699.5E-MEXP-849-raw-cel-1181980942
16.899.5GSM62694Columbia flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
16.799.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.999.5E-MEXP-1592-raw-cel-1617526880
15.299.4E-MEXP-849-raw-cel-1181980966
14.599.4E-MEXP-1592-raw-cel-1617526944
14.299.4E-MEXP-509-raw-cel-829148561
13.999.4E-MEXP-849-raw-cel-1181980950
13.599.4E-MEXP-849-raw-cel-1181980958
13.599.4E-MEXP-1592-raw-cel-1617526912
13.599.4E-MEXP-849-raw-cel-1181980934
13.299.4GSM253195RGA-GR-MOCK-REP2GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
12.999.3GSM253197RGA-GR-MOCK-REP3GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
12.799.3E-MEXP-1592-raw-cel-1617526976
12.599.3E-MEXP-509-raw-cel-829148525
12.399.3GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
12.199.3GSM128732Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
11.899.3E-MEXP-849-raw-cel-1181980894
10.499.2GSM128729Hennig_1-1_flower-buds-CK_021114_1_A_Rep1_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
9.399.1E-MEXP-849-raw-cel-1181980974
9.399.1GSM133030BC482-2GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
9.099.1GSM253194RGA-GR-DEX-REP1GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
9.099.1GSM253199Nontransgenic(ga1-3rgargl2)-DEX-REP1GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
8.699.0E-MEXP-509-raw-cel-829148597

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0491GO:0009909Any process that modulates the frequency, rate or extent of flower development.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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