CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g68640

Gene name PAN (PERIANTHIA)

Module size 9 genes

NF 0.43

%ile 60.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.22 17.5 1.00 At1g68640 843194 PAN (PERIANTHIA) Encodes bZIP-transcription factor. Mutant plants have extra floral organs. O.I. H.G. S.X.
0.71 84.2 0.59 At2g07696 815372 ribosomal protein S7 family protein F:structural constituent of ribosome;P:translation;C:ribosome, small ribosomal subunit, intracellular;BOPMAF O.I. H.G. S.X.
0.71 84.2 0.57 At2g20710 816599 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POFMB O.I. H.G. S.X.
0.67 81.6 0.61 At3g49710 824133 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. H.G. S.X.
0.67 81.6 0.62 At5g44150 834438 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBO O.I. H.G. S.X.
0.59 74.7 0.57 At1g55460 841993 Kin17 DNA-binding protein-related F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBVA O.I. H.G. S.X.
0.57 73.8 0.61 At3g21430 821697 - - O.I. H.G. S.X.
0.28 30.3 0.62 At1g31760 840063 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFMV O.I. H.G. S.X.
0.28 30.3 0.58 At2g20480 816568 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.22	17.5	1.00	At1g68640	843194	PAN (PERIANTHIA)	Encodes bZIP-transcription factor. Mutant plants have extra floral organs.	O.I.	H.G.	S.X.
0.71	84.2	0.59	At2g07696	815372	ribosomal protein S7 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, small ribosomal subunit, intracellular;BOPMAF	O.I.	H.G.	S.X.
0.71	84.2	0.57	At2g20710	816599	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:mitochondrion;POFMB	O.I.	H.G.	S.X.
0.67	81.6	0.61	At3g49710	824133	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	H.G.	S.X.
0.67	81.6	0.62	At5g44150	834438	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBO	O.I.	H.G.	S.X.
0.59	74.7	0.57	At1g55460	841993	Kin17 DNA-binding protein-related	F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBVA	O.I.	H.G.	S.X.
0.57	73.8	0.61	At3g21430	821697	-	-	O.I.	H.G.	S.X.
0.28	30.3	0.62	At1g31760	840063	SWIB complex BAF60b domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFMV	O.I.	H.G.	S.X.
0.28	30.3	0.58	At2g20480	816568	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
101.5 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
98.1 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
87.6 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
82.2 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.9 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
80.6 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.4 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
78.6 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.3 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
76.9 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
76.5 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
73.7 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
72.6 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
70.5 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.2 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
67.7 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.4 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
61.8 99.8 GSM216981 Vector_shoots_4h_GA4+DEX_repl2 GSE8741 DELLA protein direct targets in Arabidopsis
56.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.6 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.7 99.8 E-ATMX-35-raw-cel-1574334832
52.7 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
49.0 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
48.5 99.8 GSM216973 Vector_shoots_4h_GA4+DEX_repl1 GSE8741 DELLA protein direct targets in Arabidopsis
43.8 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.0 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.1 99.7 E-ATMX-35-raw-cel-1574334816
31.3 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.5 99.7 E-ATMX-35-raw-cel-1574334800
23.6 99.6 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
23.5 99.6 GSM47019 Ler 9 GSE2473 Small RNA biogenesis mutants
20.8 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.5 99.6 E-MEXP-1592-raw-cel-1617526848
20.1 99.6 GSM47018 Ler 8 GSE2473 Small RNA biogenesis mutants
17.9 99.5 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.6 99.5 E-MEXP-849-raw-cel-1181980942
16.8 99.5 GSM62694 Columbia flowers_stage 1-10 GSE2848 Auxin Response Factor mediated flower gene expression
16.7 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.9 99.5 E-MEXP-1592-raw-cel-1617526880
15.2 99.4 E-MEXP-849-raw-cel-1181980966
14.5 99.4 E-MEXP-1592-raw-cel-1617526944
14.2 99.4 E-MEXP-509-raw-cel-829148561
13.9 99.4 E-MEXP-849-raw-cel-1181980950
13.5 99.4 E-MEXP-849-raw-cel-1181980958
13.5 99.4 E-MEXP-1592-raw-cel-1617526912
13.5 99.4 E-MEXP-849-raw-cel-1181980934
13.2 99.4 GSM253195 RGA-GR-MOCK-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
12.9 99.3 GSM253197 RGA-GR-MOCK-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
12.7 99.3 E-MEXP-1592-raw-cel-1617526976
12.5 99.3 E-MEXP-509-raw-cel-829148525
12.3 99.3 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.1 99.3 GSM128732 Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
11.8 99.3 E-MEXP-849-raw-cel-1181980894
10.4 99.2 GSM128729 Hennig_1-1_flower-buds-CK_021114_1_A_Rep1_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
9.3 99.1 E-MEXP-849-raw-cel-1181980974
9.3 99.1 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
9.0 99.1 GSM253194 RGA-GR-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
9.0 99.1 GSM253199 Nontransgenic(ga1-3rgargl2)-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
8.6 99.0 E-MEXP-509-raw-cel-829148597

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
101.5	99.9	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
98.1	99.9	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
87.6	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
82.2	99.9	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.9	99.9	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
80.6	99.9	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.4	99.9	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
78.6	99.9	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.3	99.9	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
76.9	99.9	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
76.5	99.9	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
73.7	99.9	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
72.6	99.9	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.4	99.9	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
70.5	99.9	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.2	99.9	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
67.7	99.9	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.4	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
61.8	99.8	GSM216981	Vector_shoots_4h_GA4+DEX_repl2	GSE8741	DELLA protein direct targets in Arabidopsis
56.8	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.6	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.7	99.8	E-ATMX-35-raw-cel-1574334832
52.7	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
49.0	99.8	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
48.5	99.8	GSM216973	Vector_shoots_4h_GA4+DEX_repl1	GSE8741	DELLA protein direct targets in Arabidopsis
43.8	99.8	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.0	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.1	99.7	E-ATMX-35-raw-cel-1574334816
31.3	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.5	99.7	E-ATMX-35-raw-cel-1574334800
23.6	99.6	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
23.5	99.6	GSM47019	Ler 9	GSE2473	Small RNA biogenesis mutants
20.8	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
20.5	99.6	E-MEXP-1592-raw-cel-1617526848
20.1	99.6	GSM47018	Ler 8	GSE2473	Small RNA biogenesis mutants
17.9	99.5	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.6	99.5	E-MEXP-849-raw-cel-1181980942
16.8	99.5	GSM62694	Columbia flowers_stage 1-10	GSE2848	Auxin Response Factor mediated flower gene expression
16.7	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.9	99.5	E-MEXP-1592-raw-cel-1617526880
15.2	99.4	E-MEXP-849-raw-cel-1181980966
14.5	99.4	E-MEXP-1592-raw-cel-1617526944
14.2	99.4	E-MEXP-509-raw-cel-829148561
13.9	99.4	E-MEXP-849-raw-cel-1181980950
13.5	99.4	E-MEXP-849-raw-cel-1181980958
13.5	99.4	E-MEXP-1592-raw-cel-1617526912
13.5	99.4	E-MEXP-849-raw-cel-1181980934
13.2	99.4	GSM253195	RGA-GR-MOCK-REP2	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
12.9	99.3	GSM253197	RGA-GR-MOCK-REP3	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
12.7	99.3	E-MEXP-1592-raw-cel-1617526976
12.5	99.3	E-MEXP-509-raw-cel-829148525
12.3	99.3	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.1	99.3	GSM128732	Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1	GSE5526	Transcriptional Programs of Early Reproductive Stages in Arabidopsis
11.8	99.3	E-MEXP-849-raw-cel-1181980894
10.4	99.2	GSM128729	Hennig_1-1_flower-buds-CK_021114_1_A_Rep1_ATH1	GSE5526	Transcriptional Programs of Early Reproductive Stages in Arabidopsis
9.3	99.1	E-MEXP-849-raw-cel-1181980974
9.3	99.1	GSM133030	BC482-2	GSE5684	AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
9.0	99.1	GSM253194	RGA-GR-DEX-REP1	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
9.0	99.1	GSM253199	Nontransgenic(ga1-3rgargl2)-DEX-REP1	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
8.6	99.0	E-MEXP-509-raw-cel-829148597

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.049 1 GO:0009909 Any process that modulates the frequency, rate or extent of flower development.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.049	1	GO:0009909	Any process that modulates the frequency, rate or extent of flower development.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g68640
Gene name	PAN (PERIANTHIA)
Module size	9 genes
NF	0.43
%ile	60.0

Co-expression analysis

Gene ID At1g68640 Gene name PAN (PERIANTHIA) Module size 9 genes NF 0.43 %ile 60.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0491GO:0009909Any process that modulates the frequency, rate or extent of flower development.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g68640

Gene name PAN (PERIANTHIA)

Module size 9 genes

NF 0.43

%ile 60.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.049 1 GO:0009909 Any process that modulates the frequency, rate or extent of flower development.

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays