Co-expression analysis

Gene ID At1g67870
Gene name glycine-rich protein
Module size 6 genes
NF 0.36
%ile 48.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.3846.71.00At1g67870843115glycine-rich proteinF:unknown;P:biological_process unknown;C:unknown;MOBPFAVO.I.H.G.S.X.
0.5570.60.75At2g39850818572identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.H.G.S.X.
0.3338.10.76At4g00880827989auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.H.G.S.X.
0.3133.80.77At2g32870817848meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.2930.30.76At2g32860817847BGLU33 (BETA GLUCOSIDASE 33)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.H.G.S.X.
0.2217.50.76At5g49660835028leucine-rich repeat transmembrane protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.199.9GSM131585ATGE_34_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
57.599.8GSM131586ATGE_34_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
52.699.8GSM131587ATGE_34_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
41.299.8GSM133818Yang_1-3_young-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thalianaLink to GEO
40.799.8GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
39.799.8GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
34.799.7E-MEXP-285-raw-cel-440782791
32.999.7GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
31.499.7E-MEXP-1138-raw-cel-1432772682
31.199.7E-MEXP-1138-raw-cel-1432772522
30.399.7E-MEXP-1138-raw-cel-1432772650
29.499.7E-MEXP-1451-raw-cel-1585200202
28.499.7E-MEXP-1451-raw-cel-1585200234
27.899.7GSM133820Yang_1-5_young-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thalianaLink to GEO
26.799.7E-MEXP-285-raw-cel-440782725
26.599.7E-MEXP-1138-raw-cel-1432772618
26.299.7E-MEXP-1451-raw-cel-1585200266
25.999.7E-MEXP-1451-raw-cel-1585200170
24.599.6E-MEXP-1138-raw-cel-1432772554
24.499.6E-MEXP-1138-raw-cel-1432772586
23.999.6GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
23.399.6E-MEXP-1451-raw-cel-1585200298
22.799.6E-MEXP-1138-raw-cel-1432772938
22.699.6E-MEXP-1138-raw-cel-1432772906
22.599.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
20.099.6GSM133821Yang_1-6_old-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thalianaLink to GEO
19.099.5E-MEXP-1138-raw-cel-1432772842
18.399.5E-MEXP-1138-raw-cel-1432772714
18.199.5GSM131615ATGE_53_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
18.099.5GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
17.399.5E-MEXP-1138-raw-cel-1432772778
17.199.5GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
16.999.5E-MEXP-1451-raw-cel-1585200362
16.799.5GSM62698arf6/arf6 ARF8/arf8 flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
16.599.5E-MEXP-1138-raw-cel-1432772810
16.399.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.599.5E-MEXP-1443-raw-cel-1581869515
15.499.5GSM131617ATGE_53_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
15.199.4GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.099.4E-MEXP-1138-raw-cel-1432772874
14.999.4GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.899.4GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.899.4E-MEXP-1138-raw-cel-1432772746
14.899.4GSM131616ATGE_53_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
14.599.4GSM62699arf6/arf6 ARF8/arf8 flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
14.599.4E-MEXP-265-raw-cel-414617695
13.899.4E-MEXP-1451-raw-cel-1585200330
13.799.4E-MEXP-265-raw-cel-414619001
13.699.4GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
13.699.4GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.299.4GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.299.4GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.199.4GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.099.4GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.999.3GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.899.3GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.699.3E-MEXP-1138-raw-cel-1432773130
12.599.3GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.499.3E-MEXP-1138-raw-cel-1432773354
12.199.3GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.199.3E-MEXP-1138-raw-cel-1432773322
12.199.3GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.199.3GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.999.3E-MEXP-1138-raw-cel-1432773066
11.899.3E-MEXP-1138-raw-cel-1432773002
11.899.3E-MEXP-1592-raw-cel-1617526960
11.699.3GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.199.2E-MEXP-1138-raw-cel-1432773226
11.199.2GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
11.199.2E-MEXP-1138-raw-cel-1432772970
11.099.2E-MEXP-1138-raw-cel-1432773162
10.999.2GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.899.2E-MEXP-265-raw-cel-414617783
10.799.2GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.699.2GSM232889Wt.3-1.0GSE9201Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5Link to GEO
10.699.2GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.599.2E-MEXP-265-raw-cel-414618900
10.199.2E-MEXP-1138-raw-cel-1432773098
9.999.1GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.799.1E-ATMX-35-raw-cel-1574334880
9.699.1GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.699.1E-MEXP-265-raw-cel-414619106
9.599.1GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
9.299.1GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.899.0GSM62695Columbia flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
8.899.0E-MEXP-1138-raw-cel-1432773258

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0371GO:0043086Any process that stops or reduces the activity of an enzyme.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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