CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g67030

Gene name ZFP6 (ZINC FINGER PROTEIN 6)

Module size 5 genes

NF 0.35

%ile 46.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.44 57.2 1.00 At1g67030 843022 ZFP6 (ZINC FINGER PROTEIN 6) Encodes a zinc finger protein containing only a single zinc finger. O.I. H.G. S.X.
0.50 65.3 0.78 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO O.I. H.G. S.X.
0.40 50.8 0.73 At5g59530 836072 2-oxoglutarate-dependent dioxygenase, putative F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM O.I. H.G. S.X.
0.32 35.7 0.75 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. H.G. S.X.
0.28 30.3 0.78 At4g14465 827093 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.44	57.2	1.00	At1g67030	843022	ZFP6 (ZINC FINGER PROTEIN 6)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	H.G.	S.X.
0.50	65.3	0.78	At5g44920	834522	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO	O.I.	H.G.	S.X.
0.40	50.8	0.73	At5g59530	836072	2-oxoglutarate-dependent dioxygenase, putative	F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM	O.I.	H.G.	S.X.
0.32	35.7	0.75	At2g04800	815024	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.28	30.3	0.78	At4g14465	827093	DNA-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.9 99.7 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
30.0 99.7 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
29.0 99.7 E-ATMX-35-raw-cel-1574334848
28.4 99.7 E-MEXP-1138-raw-cel-1432773194
26.4 99.7 E-MEXP-1138-raw-cel-1432773162
26.3 99.7 E-MEXP-1138-raw-cel-1432773098
25.2 99.6 E-MEXP-1138-raw-cel-1432773386
24.8 99.6 E-ATMX-35-raw-cel-1574334864
24.6 99.6 E-MEXP-1138-raw-cel-1432772970
24.5 99.6 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
24.4 99.6 E-MEXP-1138-raw-cel-1432773354
24.2 99.6 E-ATMX-35-raw-cel-1574334880
23.8 99.6 E-MEXP-1138-raw-cel-1432773130
23.5 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.4 99.6 E-MEXP-1138-raw-cel-1432773226
23.0 99.6 E-MEXP-1138-raw-cel-1432773002
22.5 99.6 E-MEXP-1138-raw-cel-1432772618
22.2 99.6 E-MEXP-285-raw-cel-440782791
22.0 99.6 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
22.0 99.6 E-MEXP-1138-raw-cel-1432772650
22.0 99.6 E-MEXP-1138-raw-cel-1432772842
21.6 99.6 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
21.2 99.6 E-MEXP-1138-raw-cel-1432772586
21.1 99.6 E-MEXP-1138-raw-cel-1432772522
20.8 99.6 E-MEXP-1138-raw-cel-1432772682
20.7 99.6 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.6 99.6 E-MEXP-1138-raw-cel-1432772554
20.4 99.6 E-MEXP-1138-raw-cel-1432772714
20.4 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.1 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.9 99.6 E-MEXP-285-raw-cel-440782725
19.8 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.6 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.5 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.2 99.6 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.0 99.5 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
18.6 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.3 99.5 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.8 99.5 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.7 99.5 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.7 99.5 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.6 99.5 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.5 99.5 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.5 99.5 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
17.4 99.5 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.4 99.5 E-MEXP-1138-raw-cel-1432772874
17.3 99.5 E-MEXP-1138-raw-cel-1432772746
16.8 99.5 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.8 99.5 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.7 99.5 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
16.5 99.5 E-MEXP-1138-raw-cel-1432772778
16.3 99.5 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.3 99.5 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
16.3 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.8 99.5 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
15.3 99.4 E-MEXP-1138-raw-cel-1432772810
15.1 99.4 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.9 99.4 E-MEXP-1138-raw-cel-1432772906
14.9 99.4 E-MEXP-1138-raw-cel-1432772938
14.8 99.4 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.3 99.4 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.9 99.3 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.8 99.3 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.1 99.3 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
11.7 99.3 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.5 99.3 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.2 99.2 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.7 99.2 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.5 99.2 GSM106969 opr3_OPDA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.3 99.2 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.1 99.2 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.9 99.1 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.0 99.1 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
35.9	99.7	GSM154503	Arabidopsis desiccated mature pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
30.0	99.7	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
29.0	99.7	E-ATMX-35-raw-cel-1574334848
28.4	99.7	E-MEXP-1138-raw-cel-1432773194
26.4	99.7	E-MEXP-1138-raw-cel-1432773162
26.3	99.7	E-MEXP-1138-raw-cel-1432773098
25.2	99.6	E-MEXP-1138-raw-cel-1432773386
24.8	99.6	E-ATMX-35-raw-cel-1574334864
24.6	99.6	E-MEXP-1138-raw-cel-1432772970
24.5	99.6	GSM154505	Arabidopsis hydrated pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
24.4	99.6	E-MEXP-1138-raw-cel-1432773354
24.2	99.6	E-ATMX-35-raw-cel-1574334880
23.8	99.6	E-MEXP-1138-raw-cel-1432773130
23.5	99.6	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.4	99.6	E-MEXP-1138-raw-cel-1432773226
23.0	99.6	E-MEXP-1138-raw-cel-1432773002
22.5	99.6	E-MEXP-1138-raw-cel-1432772618
22.2	99.6	E-MEXP-285-raw-cel-440782791
22.0	99.6	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
22.0	99.6	E-MEXP-1138-raw-cel-1432772650
22.0	99.6	E-MEXP-1138-raw-cel-1432772842
21.6	99.6	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
21.2	99.6	E-MEXP-1138-raw-cel-1432772586
21.1	99.6	E-MEXP-1138-raw-cel-1432772522
20.8	99.6	E-MEXP-1138-raw-cel-1432772682
20.7	99.6	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.6	99.6	E-MEXP-1138-raw-cel-1432772554
20.4	99.6	E-MEXP-1138-raw-cel-1432772714
20.4	99.6	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.1	99.6	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.9	99.6	E-MEXP-285-raw-cel-440782725
19.8	99.6	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.6	99.6	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.5	99.6	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.2	99.6	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.0	99.5	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
18.6	99.5	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.3	99.5	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
17.8	99.5	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
17.7	99.5	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
17.7	99.5	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
17.6	99.5	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.5	99.5	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.5	99.5	GSM142739	DH001_ATH1_A6-TCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
17.4	99.5	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.4	99.5	E-MEXP-1138-raw-cel-1432772874
17.3	99.5	E-MEXP-1138-raw-cel-1432772746
16.8	99.5	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.8	99.5	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.7	99.5	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
16.5	99.5	E-MEXP-1138-raw-cel-1432772778
16.3	99.5	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.3	99.5	GSM142740	DH001_ATH1_A7-MPG1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
16.3	99.5	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.8	99.5	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
15.3	99.4	E-MEXP-1138-raw-cel-1432772810
15.1	99.4	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
14.9	99.4	E-MEXP-1138-raw-cel-1432772906
14.9	99.4	E-MEXP-1138-raw-cel-1432772938
14.8	99.4	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.3	99.4	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
12.9	99.3	GSM106916	opr3_JA_22 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.8	99.3	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.1	99.3	GSM142736	DH001_ATH1_A3-TCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
11.7	99.3	GSM133967	Fukuda_1-12_10B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.5	99.3	GSM133966	Fukuda_1-11_10A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.2	99.2	GSM239252	Columbia glabrous (C24) wild type stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.7	99.2	GSM133964	Fukuda_1-9_8A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.5	99.2	GSM106969	opr3_OPDA_22 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.3	99.2	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.1	99.2	GSM133962	Fukuda_1-7_6A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.9	99.1	GSM133965	Fukuda_1-10_8B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.0	99.1	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.015	1	GO:0045087	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g67030
Gene name	ZFP6 (ZINC FINGER PROTEIN 6)
Module size	5 genes
NF	0.35
%ile	46.5

Co-expression analysis

Gene ID At1g67030 Gene name ZFP6 (ZINC FINGER PROTEIN 6) Module size 5 genes NF 0.35 %ile 46.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0151GO:0045087Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g67030

Gene name ZFP6 (ZINC FINGER PROTEIN 6)

Module size 5 genes

NF 0.35

%ile 46.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays