Co-expression analysis

Gene ID At1g65730
Gene name YSL7 (YELLOW STRIPE LIKE 7)
Module size 26 genes
NF 0.43
%ile 60.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4659.81.00At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4O.I.H.G.S.X.
0.7586.90.61At1g07795837294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6478.90.55At1g23800838991ALDH2B7Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.O.I.H.G.S.X.
0.5570.60.57At4g22960828395unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.5368.60.59At5g25400832612phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.5368.60.58At5g61430836264ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.H.G.S.X.
0.5166.30.55At5g03620831777subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.H.G.S.X.
0.4963.50.58At5g03250831894phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PMO.I.H.G.S.X.
0.4761.20.56At1g22760838882PAB3 (POLY(A) BINDING PROTEIN 3)Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.O.I.H.G.S.X.
0.4659.80.60At4g16480827346INT4 (INOSITOL TRANSPORTER 4)Encodes a high affinity H+:myo-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of myo-inositol.O.I.H.G.S.X.
0.4558.30.56At1g30350839915pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.H.G.S.X.
0.4355.30.54At1g23250838934calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.4253.90.54At1g50310841453STP9 (SUGAR TRANSPORTER 9)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.H.G.S.X.
0.4152.40.56At3g05960819766STP6 (SUGAR TRANSPORTER 6)Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination.O.I.H.G.S.X.
0.4152.40.55At1g15460838116BOR4 (REQUIRES HIGH BORON 4)Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.O.I.H.G.S.X.
0.4152.40.54At1g63180842622UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development.O.I.H.G.S.X.
0.4152.40.56At5g25550832630leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.3948.40.55At2g45040819111matrix metalloproteinaseF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFAO.I.H.G.S.X.
0.3948.40.55At3g51490824312TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plant-type vacuole membrane, membrane;BFMPOAO.I.H.G.S.X.
0.3846.70.56At1g07850837300transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFOO.I.H.G.S.X.
0.3643.60.55At2g16120816109mannitol transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAVO.I.H.G.S.X.
0.3643.60.54At3g17630821030ATCHX19 (CATION/H+ EXCHANGER 19)member of Putative Na+/H+ antiporter familyO.I.H.G.S.X.
0.3643.60.56At4g18960827631AG (AGAMOUS)Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.O.I.H.G.S.X.
0.3541.60.55At4g10440826636dehydration-responsive family proteinF:unknown;P:unknown;C:unknown;PBOAO.I.H.G.S.X.
0.3541.60.56At1g26610839201zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOFVO.I.H.G.S.X.
0.3439.80.58At4g11030826704long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeF:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
129.899.9E-ATMX-35-raw-cel-1574334832
105.499.9E-ATMX-35-raw-cel-1574334800
89.099.9E-ATMX-35-raw-cel-1574334816
61.199.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
53.099.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.199.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.599.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.399.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.999.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.499.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.399.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.599.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.499.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.999.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.199.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.499.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.399.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.399.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.899.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
33.899.7GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
33.499.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.399.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.499.7GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
23.999.6GSM133780Lindsey_1-3_globular-apical_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
19.199.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.599.5GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.699.2E-MEXP-1138-raw-cel-1432773322
10.299.2E-MEXP-1138-raw-cel-1432773258
9.599.1GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.499.1E-MEXP-1138-raw-cel-1432773290
9.299.1GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.099.1GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
8.699.0GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0913GO:0055085The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute.Link to AmiGO
0.0741GO:0034219The process whereby a carbohydrate is transported from one side of a membrane to the other.Link to AmiGO
0.0711GO:0048497The process by which the identity of a floral organ is maintained. Identity is considered to be the aggregate of characteristics by which a structure is recognized.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.069200071Fatty acid metabolismLink to KEGG PATHWAY
0.050100340Histidine metabolismLink to KEGG PATHWAY
0.049100310Lysine degradationLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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