CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g62740

Gene name stress-inducible protein, putative

Module size 5 genes

NF 0.26

%ile 28.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.35 41.6 1.00 At1g62740 842572 stress-inducible protein, putative F:binding;P:response to stress;C:cytosol, nucleus, plasma membrane;OBMPFAV O.I. H.G. S.X.
0.44 57.2 0.88 At5g56000 835698 heat shock protein 81-4 (HSP81-4) F:unfolded protein binding, ATP binding;P:protein folding;C:cytosol, apoplast, cell wall, nucleus, plasma membrane;OMBFPAV O.I. H.G. S.X.
0.44 57.2 0.88 At5g56030 835701 HSP81-2 (HEAT SHOCK PROTEIN 81-2) a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. O.I. H.G. S.X.
0.40 50.8 0.89 At1g79920 844332 ATP binding F:ATP binding;P:unknown;C:cell wall, plasma membrane;BOMFPAV O.I. H.G. S.X.
0.10 3.4 0.88 At3g04710 819629 ankyrin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.35	41.6	1.00	At1g62740	842572	stress-inducible protein, putative	F:binding;P:response to stress;C:cytosol, nucleus, plasma membrane;OBMPFAV	O.I.	H.G.	S.X.
0.44	57.2	0.88	At5g56000	835698	heat shock protein 81-4 (HSP81-4)	F:unfolded protein binding, ATP binding;P:protein folding;C:cytosol, apoplast, cell wall, nucleus, plasma membrane;OMBFPAV	O.I.	H.G.	S.X.
0.44	57.2	0.88	At5g56030	835701	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl.	O.I.	H.G.	S.X.
0.40	50.8	0.89	At1g79920	844332	ATP binding	F:ATP binding;P:unknown;C:cell wall, plasma membrane;BOMFPAV	O.I.	H.G.	S.X.
0.10	3.4	0.88	At3g04710	819629	ankyrin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.5 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
35.9 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.0 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.1 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.9 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.9 99.7 GSM292077 Wt, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
27.2 99.7 E-MEXP-1304-raw-cel-1530618235
25.7 99.7 E-MEXP-1468-raw-cel-1591138754
25.0 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
24.7 99.6 E-MEXP-1304-raw-cel-1530618033
24.5 99.6 E-MEXP-1468-raw-cel-1591138721
24.0 99.6 E-MEXP-1304-raw-cel-1530618136
22.5 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.5 99.6 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.2 99.6 E-MEXP-1304-raw-cel-1530618275
22.2 99.6 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.1 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.1 99.6 GSM292081 pif1-2, dark sample, biological rep3 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
21.9 99.6 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.5 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.5 99.6 E-MEXP-1304-raw-cel-1530618171
21.3 99.6 E-MEXP-1468-raw-cel-1591138688
20.8 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.4 99.6 GSM292078 Wt, dark sample, biological rep3 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
20.0 99.6 E-MEXP-1304-raw-cel-1530618203
19.0 99.5 E-MEXP-1304-raw-cel-1530617971
18.9 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.8 99.5 E-NASC-78-raw-cel-1463195219
18.8 99.5 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.4 99.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.1 99.5 GSM292080 pif1-2, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
18.0 99.5 E-MEXP-1304-raw-cel-1530618068
17.9 99.5 E-MEXP-1304-raw-cel-1530618003
17.8 99.5 E-MEXP-1304-raw-cel-1530618104
17.2 99.5 E-NASC-78-raw-cel-1463195267
16.6 99.5 E-MEXP-1304-raw-cel-1530617935
15.9 99.5 GSM292079 pif1-2, dark sample, biological rep1 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
15.4 99.5 GSM139880 eif3h_non-polysome_rep1 GSE6024 eif3h/WT polysome loading
15.3 99.4 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.2 99.4 GSM179960 Arabidopsis roots, ethylene treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
15.1 99.4 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
14.9 99.4 GSM292076 Wt, dark sample, biological rep1 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
14.8 99.4 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.5 99.4 E-MEXP-1468-raw-cel-1591138820
14.3 99.4 GSM282699 Col_BRZ_rep3 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
14.0 99.4 GSM131189 AtGen_D-22_2-AL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
14.0 99.4 GSM128715 Pieterse_1-1_Control-12h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
13.9 99.4 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
13.8 99.4 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.7 99.4 E-MEXP-1468-raw-cel-1591138853
13.7 99.4 GSM75511 Col-0 6h MOCK replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
13.6 99.4 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
13.5 99.4 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.3 99.4 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
13.0 99.4 E-MEXP-1468-raw-cel-1591138655
12.9 99.3 GSM131190 AtGen_D-23_2-UL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
12.4 99.3 GSM159300 CCA1-34_dark_early_rep1 GSE6906 Rhythmic growth explained by coincidence between internal and external cues
12.4 99.3 GSM179969 Arabidopsis aux1 mutant roots, ethylene treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
12.3 99.3 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.2 99.3 GSM131183 AtGen_D-15_1-US_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
11.9 99.3 E-MEXP-1468-raw-cel-1591138886
11.6 99.3 GSM106912 opr3_JA 8hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.6 99.3 GSM179961 Arabidopsis roots, ethylene treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
11.4 99.3 GSM282703 arf2_brz_2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
11.3 99.3 GSM282697 Col_BRZ_rep1 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
11.1 99.2 GSM75508 Col-0 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
11.0 99.2 GSM158680 Col_dark_early_rep1 GSE6906 Rhythmic growth explained by coincidence between internal and external cues
10.9 99.2 E-MEXP-1468-raw-cel-1591139018
10.8 99.2 GSM282698 Col_BRZ_rep2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
10.8 99.2 E-MEXP-1468-raw-cel-1591138919
10.7 99.2 GSM319209 Dark-grown WT control (vector#4) GSE12729 Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
10.5 99.2 E-MEXP-1468-raw-cel-1591138985
10.4 99.2 GSM134514 Col-0_4day_dark_-lincomycin_rep2 GSE5759 red illumination w/o lincomycin
10.1 99.2 GSM131199 AtGen_D-33_3-DL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
10.0 99.2 GSM184505 Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.0 99.2 GSM131182 AtGen_D-14_1-AS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
9.6 99.1 GSM131186 AtGen_D-19_2-PL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
9.6 99.1 GSM106914 opr3_JA_8 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.5 99.1 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
9.5 99.1 GSM75515 Col-0 6h MOCK replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
9.2 99.1 GSM131192 AtGen_D-25_2-DS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
9.2 99.1 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.2 99.1 GSM226268 WT(Ler)_Dark_replicate2 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
9.2 99.1 GSM131178 AtGen_D-10_1-FS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
9.1 99.1 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.1 99.1 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
8.9 99.0 E-MEXP-1468-raw-cel-1591138952
8.9 99.0 GSM131180 AtGen_D-12_1-RS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
8.9 99.0 GSM131193 AtGen_D-27_2-PS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
8.9 99.0 GSM297396 At.StarchSD.WTSS3.WTR2D8 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
8.6 99.0 GSM131198 AtGen_D-32_2-WS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
8.6 99.0 GSM131174 AtGen_D-6_1-AL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
54.5	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
35.9	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.0	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.1	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
30.9	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.9	99.7	GSM292077	Wt, dark sample, biological rep2	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
27.2	99.7	E-MEXP-1304-raw-cel-1530618235
25.7	99.7	E-MEXP-1468-raw-cel-1591138754
25.0	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
24.7	99.6	E-MEXP-1304-raw-cel-1530618033
24.5	99.6	E-MEXP-1468-raw-cel-1591138721
24.0	99.6	E-MEXP-1304-raw-cel-1530618136
22.5	99.6	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
22.5	99.6	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.2	99.6	E-MEXP-1304-raw-cel-1530618275
22.2	99.6	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.1	99.6	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.1	99.6	GSM292081	pif1-2, dark sample, biological rep3	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
21.9	99.6	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.5	99.6	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.5	99.6	E-MEXP-1304-raw-cel-1530618171
21.3	99.6	E-MEXP-1468-raw-cel-1591138688
20.8	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.4	99.6	GSM292078	Wt, dark sample, biological rep3	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
20.0	99.6	E-MEXP-1304-raw-cel-1530618203
19.0	99.5	E-MEXP-1304-raw-cel-1530617971
18.9	99.5	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.8	99.5	E-NASC-78-raw-cel-1463195219
18.8	99.5	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.4	99.5	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.1	99.5	GSM292080	pif1-2, dark sample, biological rep2	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
18.0	99.5	E-MEXP-1304-raw-cel-1530618068
17.9	99.5	E-MEXP-1304-raw-cel-1530618003
17.8	99.5	E-MEXP-1304-raw-cel-1530618104
17.2	99.5	E-NASC-78-raw-cel-1463195267
16.6	99.5	E-MEXP-1304-raw-cel-1530617935
15.9	99.5	GSM292079	pif1-2, dark sample, biological rep1	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
15.4	99.5	GSM139880	eif3h_non-polysome_rep1	GSE6024	eif3h/WT polysome loading
15.3	99.4	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.2	99.4	GSM179960	Arabidopsis roots, ethylene treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
15.1	99.4	GSM131608	ATGE_42_D	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
14.9	99.4	GSM292076	Wt, dark sample, biological rep1	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
14.8	99.4	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.5	99.4	E-MEXP-1468-raw-cel-1591138820
14.3	99.4	GSM282699	Col_BRZ_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
14.0	99.4	GSM131189	AtGen_D-22_2-AL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
14.0	99.4	GSM128715	Pieterse_1-1_Control-12h_Rep1_ATH1	GSE5525	Transcriptome changes of Arabidopsis during pathogen and insect attack
13.9	99.4	GSM131606	ATGE_42_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
13.8	99.4	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.7	99.4	E-MEXP-1468-raw-cel-1591138853
13.7	99.4	GSM75511	Col-0 6h MOCK replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
13.6	99.4	GSM75521	slr-1 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
13.5	99.4	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.3	99.4	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
13.0	99.4	E-MEXP-1468-raw-cel-1591138655
12.9	99.3	GSM131190	AtGen_D-23_2-UL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
12.4	99.3	GSM159300	CCA1-34_dark_early_rep1	GSE6906	Rhythmic growth explained by coincidence between internal and external cues
12.4	99.3	GSM179969	Arabidopsis aux1 mutant roots, ethylene treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
12.3	99.3	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
12.2	99.3	GSM131183	AtGen_D-15_1-US_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
11.9	99.3	E-MEXP-1468-raw-cel-1591138886
11.6	99.3	GSM106912	opr3_JA 8hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.6	99.3	GSM179961	Arabidopsis roots, ethylene treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
11.4	99.3	GSM282703	arf2_brz_2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
11.3	99.3	GSM282697	Col_BRZ_rep1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
11.1	99.2	GSM75508	Col-0 0h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
11.0	99.2	GSM158680	Col_dark_early_rep1	GSE6906	Rhythmic growth explained by coincidence between internal and external cues
10.9	99.2	E-MEXP-1468-raw-cel-1591139018
10.8	99.2	GSM282698	Col_BRZ_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
10.8	99.2	E-MEXP-1468-raw-cel-1591138919
10.7	99.2	GSM319209	Dark-grown WT control (vector#4)	GSE12729	Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
10.5	99.2	E-MEXP-1468-raw-cel-1591138985
10.4	99.2	GSM134514	Col-0_4day_dark_-lincomycin_rep2	GSE5759	red illumination w/o lincomycin
10.1	99.2	GSM131199	AtGen_D-33_3-DL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
10.0	99.2	GSM184505	Pericycle root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.0	99.2	GSM131182	AtGen_D-14_1-AS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
9.6	99.1	GSM131186	AtGen_D-19_2-PL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.6	99.1	GSM106914	opr3_JA_8 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.5	99.1	GSM38668	NSNP	GSE2268	Arabidopsis polysome microarray
9.5	99.1	GSM75515	Col-0 6h MOCK replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
9.2	99.1	GSM131192	AtGen_D-25_2-DS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.2	99.1	GSM106913	opr3_JA_8 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.2	99.1	GSM226268	WT(Ler)_Dark_replicate2	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
9.2	99.1	GSM131178	AtGen_D-10_1-FS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
9.1	99.1	GSM131607	ATGE_42_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.1	99.1	GSM75519	slr-1 0h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
8.9	99.0	E-MEXP-1468-raw-cel-1591138952
8.9	99.0	GSM131180	AtGen_D-12_1-RS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
8.9	99.0	GSM131193	AtGen_D-27_2-PS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
8.9	99.0	GSM297396	At.StarchSD.WTSS3.WTR2D8	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
8.6	99.0	GSM131198	AtGen_D-32_2-WS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
8.6	99.0	GSM131174	AtGen_D-6_1-AL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0050821 Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
0.095 1 GO:0010286 Any process that increases heat tolerance of an organism in response to high temperatures.
0.024 1 GO:0009908 The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.

SF	Genes	GO ID	Process Name
0.222	1	GO:0050821	Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
0.095	1	GO:0010286	Any process that increases heat tolerance of an organism in response to high temperatures.
0.024	1	GO:0009908	The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g62740
Gene name	stress-inducible protein, putative
Module size	5 genes
NF	0.26
%ile	28.3

Co-expression analysis

Gene ID At1g62740 Gene name stress-inducible protein, putative Module size 5 genes NF 0.26 %ile 28.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g62740

Gene name stress-inducible protein, putative

Module size 5 genes

NF 0.26

%ile 28.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays