Co-expression analysis

Gene ID At1g61400
Gene name S-locus protein kinase, putative
Module size 5 genes
NF 0.12
%ile 8.6



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5773.81.00At1g61400842434S-locus protein kinase, putativeF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.1811.40.81At2g37320818309pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBO.I.H.G.S.X.
0.135.80.80At4g14850827142LOI1 (lovastatin insensitive 1)Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase.O.I.H.G.S.X.
0.092.80.80At4g05210825869bacterial transferase hexapeptide repeat-containing proteinF:transferase activity;P:biological_process unknown;C:cellular_component unknown;BOAPFMVO.I.H.G.S.X.
0.051.10.81At5g59600836079pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
72.499.9GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
72.199.9GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
68.299.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
52.899.8GSM47019Ler 9GSE2473Small RNA biogenesis mutantsLink to GEO
34.299.7GSM62694Columbia flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
29.899.7E-MEXP-849-raw-cel-1181980958
29.899.7GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
22.599.6E-MEXP-849-raw-cel-1181980974
22.099.6E-MEXP-849-raw-cel-1181980966
21.999.6GSM133752Turner_A-6-Turne-WT-Top2_SLDGSE5729Role of COV in vascular patterningLink to GEO
21.999.6E-MEXP-849-raw-cel-1181980902
21.999.6E-MEXP-849-raw-cel-1181980942
21.399.6GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
20.699.6E-MEXP-1592-raw-cel-1617526944
20.499.6GSM131623ATGE_55_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
19.599.6GSM131579ATGE_32_A2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
19.199.6GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
18.999.5E-MEXP-849-raw-cel-1181980894
18.499.5E-MEXP-849-raw-cel-1181980950
17.399.5GSM62698arf6/arf6 ARF8/arf8 flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
17.199.5GSM133748Turner_A-2-Turne-Mut-Top2_SLDGSE5729Role of COV in vascular patterningLink to GEO
17.099.5GSM75513Col-0 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
17.099.5E-MEXP-849-raw-cel-1181980934
16.999.5GSM128732Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
16.999.5E-ATMX-31-raw-cel-1516947916
16.399.5GSM131581ATGE_32_C2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
16.099.5E-MEXP-1592-raw-cel-1617526880
15.299.4GSM131621ATGE_55_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
15.199.4GSM131639ATGE_92_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
14.299.4GSM133747Turner_A-1-Turne-Mut-Top1_SLDGSE5729Role of COV in vascular patterningLink to GEO
14.199.4E-ATMX-31-raw-cel-1516947882
14.199.4GSM47018Ler 8GSE2473Small RNA biogenesis mutantsLink to GEO
14.099.4GSM270865Arabidopsis cell culture, 4 h_control_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
13.499.4GSM131641ATGE_92_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
13.199.4GSM131640ATGE_92_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
13.199.4E-ATMX-31-raw-cel-1516947899
12.999.3GSM75514Col-0 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
12.699.3E-MEXP-1592-raw-cel-1617526976
12.699.3E-MEXP-849-raw-cel-1181980926
12.699.3E-MEXP-849-raw-cel-1181980886
12.599.3E-MEXP-1592-raw-cel-1617526912
12.599.3GSM27363lec1-1 Floral BudGSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
12.499.3GSM131622ATGE_55_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
12.099.3E-MEXP-849-raw-cel-1181980918
12.099.3E-MEXP-849-raw-cel-1181980910
12.099.3E-MEXP-1797-raw-cel-1669767967
11.999.3GSM133751Turner_A-5-Turne-WT-Top1_SLDGSE5729Role of COV in vascular patterningLink to GEO
11.999.3GSM131580ATGE_32_B2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.899.3E-MEXP-1592-raw-cel-1617526848
11.499.3GSM75510Col-0 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
11.399.3GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
11.299.2GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
10.699.2GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.199.2GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
10.099.2GSM232886Wt.4-3.90GSE9201Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5Link to GEO
9.999.1GSM134204Murray_3-2_D3-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
9.899.1E-MEXP-1797-raw-cel-1669767976
9.899.1E-MEXP-1797-raw-cel-1669768057
9.699.1GSM184530Stele root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.499.1GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.499.1E-MEXP-849-raw-cel-1181980878
9.499.1E-MEXP-849-raw-cel-1181980854
9.299.1GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.199.1GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.099.1GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
9.099.1GSM253201Nontransgenic(ga1-3rgargl2)-DEX-REP3GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
8.999.0E-MEXP-1592-raw-cel-1617526824
8.999.0GSM62702arf6 arf8 flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
8.999.0GSM27359WT Floral BudGSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
8.899.0E-MEXP-849-raw-cel-1181980846
8.899.0GSM142754MJ001_ATH1_A5-jones-WT-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
8.699.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
8.699.0E-MEXP-849-raw-cel-1181980870

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0016125The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.Link to AmiGO
0.2501GO:0019287The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates.Link to AmiGO
0.2001GO:0050790Any process that modulates the activity of an enzyme.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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