Co-expression analysis

Gene ID At1g60730
Gene name aldo/keto reductase family protein
Module size 5 genes
NF 0.32
%ile 40.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4050.81.00At1g60730842367aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOFMPAO.I.H.G.S.X.
0.5065.30.73At3g05360819700AtRLP30 (Receptor Like Protein 30)F:protein binding, kinase activity;P:defense response signaling pathway, resistance gene-independent, response to cyclopentenone, signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.H.G.S.X.
0.4050.80.66At3g01970821270WRKY45member of WRKY Transcription Factor; Group IO.I.H.G.S.X.
0.2217.50.66At2g41380818736embryo-abundant protein-relatedF:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMAO.I.H.G.S.X.
0.1811.40.62At5g13330831174Rap2.6L (related to AP2 6L)encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
96.199.9E-MEXP-1474-raw-cel-1593932609
84.099.9E-MEXP-1474-raw-cel-1593932513
82.999.9E-MEXP-1474-raw-cel-1593932673
70.199.9GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
63.899.8E-MEXP-1474-raw-cel-1593932705
49.699.8E-MEXP-1474-raw-cel-1593932481
47.099.8E-MEXP-807-raw-cel-1173273060
40.699.8E-MEXP-1474-raw-cel-1593932577
37.799.7E-MEXP-807-raw-cel-1173273170
35.099.7E-MEXP-807-raw-cel-1173273252
31.999.7E-MEXP-807-raw-cel-1173273223
31.599.7E-MEXP-807-raw-cel-1173273116
31.299.7E-MEXP-807-raw-cel-1173273144
29.699.7E-MEXP-807-raw-cel-1173273196
29.599.7E-MEXP-807-raw-cel-1173273088
25.899.7E-MEXP-1474-raw-cel-1593932801
25.799.7E-MEXP-1474-raw-cel-1593932865
24.099.6GSM184499Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.999.6GSM218586Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.399.6E-MEXP-1797-raw-cel-1669767994
20.199.6GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.099.6E-MEXP-1797-raw-cel-1669768075
19.799.6GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.799.6E-MEXP-1474-raw-cel-1593932929
18.899.5E-ATMX-31-raw-cel-1516947882
17.899.5GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.499.5E-ATMX-31-raw-cel-1516947916
16.799.5GSM184508Pericycle root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.599.5GSM218585Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.499.5E-MEXP-1797-raw-cel-1669767976
15.699.5GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.399.4GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.399.4E-MEXP-1797-raw-cel-1669768012
15.299.4GSM184521Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.899.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
14.799.4E-MEXP-1797-raw-cel-1669767967
14.699.4E-MEXP-1443-raw-cel-1581869863
14.599.4E-MEXP-1474-raw-cel-1593932897
14.499.4E-MEXP-1797-raw-cel-1669768048
13.999.4E-ATMX-31-raw-cel-1516947899
13.899.4GSM184502Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.299.4E-MEXP-1797-raw-cel-1669768003
13.099.4GSM184501Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.999.3GSM40553Total RNA - hypoxia stressGSE2218Changes in transcript abundance and association with large polysomes in response to hypoxia stressLink to GEO
12.799.3GSM184530Stele root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.799.3E-MEXP-1474-raw-cel-1593932737
12.699.3GSM226534L4SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
12.599.3E-MEXP-1474-raw-cel-1593932769
12.499.3E-MEXP-1797-raw-cel-1669768066
12.299.3GSM218587Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.999.3E-MEXP-1797-raw-cel-1669768021
11.899.3E-MEXP-1797-raw-cel-1669768084
11.899.3GSM184496Endodermis&Pericycle root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.699.3GSM226535L5SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
11.699.3E-MEXP-1797-raw-cel-1669767985
11.399.3E-MEXP-1797-raw-cel-1669767958
11.099.2GSM184493Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.999.2GSM184505Pericycle root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.699.2GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.699.2E-MEXP-1797-raw-cel-1669768057
10.599.2GSM184492Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.299.2GSM184916Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.199.2GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.099.2GSM184509Pericycle root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.999.1GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.899.1GSM184910Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.899.1GSM184518Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.599.1GSM184917Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.199.1GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.099.1GSM226536L6SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
8.999.0GSM184899Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.799.0GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
8.799.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.799.0GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.799.0E-MEXP-1474-raw-cel-1593932641

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1251GO:0010204A series of molecular signals that is activated during defense response and does not depend upon R-genes.Link to AmiGO
0.0161GO:0055114The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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