CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g60730

Gene name aldo/keto reductase family protein

Module size 5 genes

NF 0.32

%ile 40.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.40 50.8 1.00 At1g60730 842367 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOFMPA O.I. H.G. S.X.
0.50 65.3 0.73 At3g05360 819700 AtRLP30 (Receptor Like Protein 30) F:protein binding, kinase activity;P:defense response signaling pathway, resistance gene-independent, response to cyclopentenone, signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. H.G. S.X.
0.40 50.8 0.66 At3g01970 821270 WRKY45 member of WRKY Transcription Factor; Group I O.I. H.G. S.X.
0.22 17.5 0.66 At2g41380 818736 embryo-abundant protein-related F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA O.I. H.G. S.X.
0.18 11.4 0.62 At5g13330 831174 Rap2.6L (related to AP2 6L) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.40	50.8	1.00	At1g60730	842367	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOFMPA	O.I.	H.G.	S.X.
0.50	65.3	0.73	At3g05360	819700	AtRLP30 (Receptor Like Protein 30)	F:protein binding, kinase activity;P:defense response signaling pathway, resistance gene-independent, response to cyclopentenone, signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	H.G.	S.X.
0.40	50.8	0.66	At3g01970	821270	WRKY45	member of WRKY Transcription Factor; Group I	O.I.	H.G.	S.X.
0.22	17.5	0.66	At2g41380	818736	embryo-abundant protein-related	F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA	O.I.	H.G.	S.X.
0.18	11.4	0.62	At5g13330	831174	Rap2.6L (related to AP2 6L)	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
96.1 99.9 E-MEXP-1474-raw-cel-1593932609
84.0 99.9 E-MEXP-1474-raw-cel-1593932513
82.9 99.9 E-MEXP-1474-raw-cel-1593932673
70.1 99.9 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
63.8 99.8 E-MEXP-1474-raw-cel-1593932705
49.6 99.8 E-MEXP-1474-raw-cel-1593932481
47.0 99.8 E-MEXP-807-raw-cel-1173273060
40.6 99.8 E-MEXP-1474-raw-cel-1593932577
37.7 99.7 E-MEXP-807-raw-cel-1173273170
35.0 99.7 E-MEXP-807-raw-cel-1173273252
31.9 99.7 E-MEXP-807-raw-cel-1173273223
31.5 99.7 E-MEXP-807-raw-cel-1173273116
31.2 99.7 E-MEXP-807-raw-cel-1173273144
29.6 99.7 E-MEXP-807-raw-cel-1173273196
29.5 99.7 E-MEXP-807-raw-cel-1173273088
25.8 99.7 E-MEXP-1474-raw-cel-1593932801
25.7 99.7 E-MEXP-1474-raw-cel-1593932865
24.0 99.6 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.9 99.6 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.3 99.6 E-MEXP-1797-raw-cel-1669767994
20.1 99.6 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.0 99.6 E-MEXP-1797-raw-cel-1669768075
19.7 99.6 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
19.7 99.6 E-MEXP-1474-raw-cel-1593932929
18.8 99.5 E-ATMX-31-raw-cel-1516947882
17.8 99.5 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.4 99.5 E-ATMX-31-raw-cel-1516947916
16.7 99.5 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.5 99.5 GSM218585 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.4 99.5 E-MEXP-1797-raw-cel-1669767976
15.6 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.3 99.4 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.3 99.4 E-MEXP-1797-raw-cel-1669768012
15.2 99.4 GSM184521 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.8 99.4 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.7 99.4 E-MEXP-1797-raw-cel-1669767967
14.6 99.4 E-MEXP-1443-raw-cel-1581869863
14.5 99.4 E-MEXP-1474-raw-cel-1593932897
14.4 99.4 E-MEXP-1797-raw-cel-1669768048
13.9 99.4 E-ATMX-31-raw-cel-1516947899
13.8 99.4 GSM184502 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.2 99.4 E-MEXP-1797-raw-cel-1669768003
13.0 99.4 GSM184501 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.9 99.3 GSM40553 Total RNA - hypoxia stress GSE2218 Changes in transcript abundance and association with large polysomes in response to hypoxia stress
12.7 99.3 GSM184530 Stele root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.7 99.3 E-MEXP-1474-raw-cel-1593932737
12.6 99.3 GSM226534 L4SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.5 99.3 E-MEXP-1474-raw-cel-1593932769
12.4 99.3 E-MEXP-1797-raw-cel-1669768066
12.2 99.3 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.9 99.3 E-MEXP-1797-raw-cel-1669768021
11.8 99.3 E-MEXP-1797-raw-cel-1669768084
11.8 99.3 GSM184496 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.6 99.3 GSM226535 L5SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.6 99.3 E-MEXP-1797-raw-cel-1669767985
11.3 99.3 E-MEXP-1797-raw-cel-1669767958
11.0 99.2 GSM184493 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.9 99.2 GSM184505 Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.6 99.2 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.6 99.2 E-MEXP-1797-raw-cel-1669768057
10.5 99.2 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.2 99.2 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
10.1 99.2 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.0 99.2 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.9 99.1 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
9.8 99.1 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
9.8 99.1 GSM184518 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.5 99.1 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
9.1 99.1 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.0 99.1 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.9 99.0 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
8.7 99.0 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
8.7 99.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
8.7 99.0 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
8.7 99.0 E-MEXP-1474-raw-cel-1593932641

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
96.1	99.9	E-MEXP-1474-raw-cel-1593932609
84.0	99.9	E-MEXP-1474-raw-cel-1593932513
82.9	99.9	E-MEXP-1474-raw-cel-1593932673
70.1	99.9	GSM133768	Lindsey_1-20_torpedo-basal_Rep5_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
63.8	99.8	E-MEXP-1474-raw-cel-1593932705
49.6	99.8	E-MEXP-1474-raw-cel-1593932481
47.0	99.8	E-MEXP-807-raw-cel-1173273060
40.6	99.8	E-MEXP-1474-raw-cel-1593932577
37.7	99.7	E-MEXP-807-raw-cel-1173273170
35.0	99.7	E-MEXP-807-raw-cel-1173273252
31.9	99.7	E-MEXP-807-raw-cel-1173273223
31.5	99.7	E-MEXP-807-raw-cel-1173273116
31.2	99.7	E-MEXP-807-raw-cel-1173273144
29.6	99.7	E-MEXP-807-raw-cel-1173273196
29.5	99.7	E-MEXP-807-raw-cel-1173273088
25.8	99.7	E-MEXP-1474-raw-cel-1593932801
25.7	99.7	E-MEXP-1474-raw-cel-1593932865
24.0	99.6	GSM184499	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
20.9	99.6	GSM218586	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
20.3	99.6	E-MEXP-1797-raw-cel-1669767994
20.1	99.6	GSM184520	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
20.0	99.6	E-MEXP-1797-raw-cel-1669768075
19.7	99.6	GSM184519	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
19.7	99.6	E-MEXP-1474-raw-cel-1593932929
18.8	99.5	E-ATMX-31-raw-cel-1516947882
17.8	99.5	GSM184516	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
17.4	99.5	E-ATMX-31-raw-cel-1516947916
16.7	99.5	GSM184508	Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.5	99.5	GSM218585	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.4	99.5	E-MEXP-1797-raw-cel-1669767976
15.6	99.5	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.3	99.4	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.3	99.4	E-MEXP-1797-raw-cel-1669768012
15.2	99.4	GSM184521	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.8	99.4	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.7	99.4	E-MEXP-1797-raw-cel-1669767967
14.6	99.4	E-MEXP-1443-raw-cel-1581869863
14.5	99.4	E-MEXP-1474-raw-cel-1593932897
14.4	99.4	E-MEXP-1797-raw-cel-1669768048
13.9	99.4	E-ATMX-31-raw-cel-1516947899
13.8	99.4	GSM184502	Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.2	99.4	E-MEXP-1797-raw-cel-1669768003
13.0	99.4	GSM184501	Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.9	99.3	GSM40553	Total RNA - hypoxia stress	GSE2218	Changes in transcript abundance and association with large polysomes in response to hypoxia stress
12.7	99.3	GSM184530	Stele root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.7	99.3	E-MEXP-1474-raw-cel-1593932737
12.6	99.3	GSM226534	L4SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.5	99.3	E-MEXP-1474-raw-cel-1593932769
12.4	99.3	E-MEXP-1797-raw-cel-1669768066
12.2	99.3	GSM218587	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.9	99.3	E-MEXP-1797-raw-cel-1669768021
11.8	99.3	E-MEXP-1797-raw-cel-1669768084
11.8	99.3	GSM184496	Endodermis&Pericycle root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.6	99.3	GSM226535	L5SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.6	99.3	E-MEXP-1797-raw-cel-1669767985
11.3	99.3	E-MEXP-1797-raw-cel-1669767958
11.0	99.2	GSM184493	Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.9	99.2	GSM184505	Pericycle root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.6	99.2	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.6	99.2	E-MEXP-1797-raw-cel-1669768057
10.5	99.2	GSM184492	Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.2	99.2	GSM184916	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.1	99.2	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.0	99.2	GSM184509	Pericycle root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.9	99.1	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
9.8	99.1	GSM184910	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
9.8	99.1	GSM184518	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.5	99.1	GSM184917	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
9.1	99.1	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.0	99.1	GSM226536	L6SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.9	99.0	GSM184899	Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
8.7	99.0	GSM311281	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
8.7	99.0	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
8.7	99.0	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
8.7	99.0	E-MEXP-1474-raw-cel-1593932641

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0010204 A series of molecular signals that is activated during defense response and does not depend upon R-genes.
0.016 1 GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.125	1	GO:0010204	A series of molecular signals that is activated during defense response and does not depend upon R-genes.
0.016	1	GO:0055114	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g60730
Gene name	aldo/keto reductase family protein
Module size	5 genes
NF	0.32
%ile	40.4

Co-expression analysis

Gene ID At1g60730 Gene name aldo/keto reductase family protein Module size 5 genes NF 0.32 %ile 40.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g60730

Gene name aldo/keto reductase family protein

Module size 5 genes

NF 0.32

%ile 40.4

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays