CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g52850

Gene name transposable element gene

Module size 6 genes

NF 0.98

%ile 99.9

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.91 95.6 1.00 At1g52850 3767446 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
1.00 100.0 0.94 At1g33130 3766887 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
1.00 100.0 0.85 At1g34530 3766917 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
1.00 100.0 0.82 At1g36260 3766987 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
1.00 100.0 0.89 At1g43840 3767325 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
1.00 100.0 0.85 At2g13160 3768696 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.9 99.7 E-MEXP-509-raw-cel-829148666
23.9 99.6 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.6 99.6 E-ATMX-34-raw-cel-1563627275
20.6 99.6 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.6 99.6 GSM128660 Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
19.8 99.6 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
18.7 99.5 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
18.1 99.5 GSM142844 MG001_ATH1_A25-Torres-8N1 GSE6176 Impact of Type III effectors on plant defense responses
14.1 99.4 E-ATMX-34-raw-cel-1563627293
14.0 99.4 E-MEXP-509-raw-cel-829148385
12.7 99.3 GSM142883 CW001_ATH1_A1.2-WestC-wsb GSE6178 Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
11.8 99.3 E-MEXP-807-raw-cel-1173272921
9.9 99.1 GSM142846 MG001_ATH1_A27-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
9.8 99.1 E-ATMX-34-raw-cel-1563627284
9.7 99.1 GSM142885 CW001_ATH1_A1.4-WestC-kub GSE6178 Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
9.6 99.1 GSM272112 Ecotype At_35SAvr2 RNA sample3 GSE10801 C. fulvum Avr2
9.3 99.1 E-MEXP-509-raw-cel-829148090
9.1 99.1 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.9 99.0 GSM128719 Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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