Co-expression analysis

Gene ID At1g52850
Gene name transposable element gene
Module size 6 genes
NF 0.98
%ile 99.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9195.61.00At1g528503767446transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.94At1g331303766887transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.85At1g345303766917transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.82At1g362603766987transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.89At1g438403767325transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.85At2g131603768696transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.999.7E-MEXP-509-raw-cel-829148666
23.999.6GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.699.6E-ATMX-34-raw-cel-1563627275
20.699.6GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
20.699.6GSM128660Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
19.899.6GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
18.799.5GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
18.199.5GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
14.199.4E-ATMX-34-raw-cel-1563627293
14.099.4E-MEXP-509-raw-cel-829148385
12.799.3GSM142883CW001_ATH1_A1.2-WestC-wsbGSE6178Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutantsLink to GEO
11.899.3E-MEXP-807-raw-cel-1173272921
9.999.1GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.899.1E-ATMX-34-raw-cel-1563627284
9.799.1GSM142885CW001_ATH1_A1.4-WestC-kubGSE6178Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutantsLink to GEO
9.699.1GSM272112Ecotype At_35SAvr2 RNA sample3GSE10801C. fulvum Avr2Link to GEO
9.399.1E-MEXP-509-raw-cel-829148090
9.199.1GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.999.0GSM128719Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attackLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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