CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g50110

Gene name branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)

Module size 30 genes

NF 0.30

%ile 36.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.57 73.8 1.00 At1g50110 841433 branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA O.I. H.G. S.X.
0.44 57.2 0.76 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.43 55.3 0.76 At1g63470 842653 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBO O.I. H.G. S.X.
0.41 52.4 0.76 At1g63480 842654 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV O.I. H.G. S.X.
0.38 46.7 0.77 At1g20590 838648 cyclin, putative F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:endomembrane system, nucleus;MPOF O.I. H.G. S.X.
0.38 46.7 0.77 At2g25270 817065 unknown protein F:unknown;P:unknown;C:plasma membrane;POBM O.I. H.G. S.X.
0.37 45.0 0.76 At4g31840 829313 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P O.I. H.G. S.X.
0.37 45.0 0.77 At1g02690 839517 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. O.I. H.G. S.X.
0.36 43.6 0.76 At5g17160 831580 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA O.I. H.G. S.X.
0.36 43.6 0.77 At3g06030 819774 ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3) NPK1-related protein kinase 3 O.I. H.G. S.X.
0.32 35.7 0.77 At1g76540 843987 CDKB2 Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling. O.I. H.G. S.X.
0.32 35.7 0.77 At3g12870 820470 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.31 33.8 0.78 At3g19590 821496 WD-40 repeat family protein / mitotic checkpoint protein, putative F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA O.I. H.G. S.X.
0.29 30.3 0.76 At1g75640 843899 leucine-rich repeat family protein / protein kinase family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.29 30.3 0.78 At4g26760 828783 MAP65-2 F:molecular_function unknown;P:anaphase;C:cortical microtubule, preprophase band, phragmoplast;MOBFPAV O.I. H.G. S.X.
0.29 30.3 0.77 At2g01210 814649 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast stroma, chloroplast, plasma membrane, plant-type cell wall;PMOBFVA O.I. H.G. S.X.
0.28 30.3 0.78 At3g22790 821850 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV O.I. H.G. S.X.
0.28 30.3 0.77 At3g01410 821319 RNase H domain-containing protein F:ribonuclease H activity, nuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POBAM O.I. H.G. S.X.
0.28 30.3 0.76 At1g10780 837621 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.28 30.3 0.78 At5g43990 834422 SUVR2 Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression. O.I. H.G. S.X.
0.27 26.2 0.76 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP O.I. H.G. S.X.
0.26 24.4 0.78 At2g27040 817246 AGO4 (ARGONAUTE 4) AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens. O.I. H.G. S.X.
0.25 22.6 0.76 At1g09450 837468 haspin-related F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.22 17.5 0.77 At1g21880 838790 LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOF O.I. H.G. S.X.
0.21 15.8 0.77 At1g07370 837249 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. O.I. H.G. S.X.
0.20 14.4 0.77 At3g62300 825403 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;PMOB O.I. H.G. S.X.
0.19 12.7 0.77 At5g13520 831196 peptidase M1 family protein F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP O.I. H.G. S.X.
0.18 11.4 0.80 At5g51590 835233 DNA-binding protein-related F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOVB O.I. H.G. S.X.
0.18 11.4 0.78 At4g33130 829450 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.17 10.2 0.76 At2g29570 817506 PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) Functionally interacts with POLH to repair DNA damaged by UVB damage. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.57	73.8	1.00	At1g50110	841433	branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)	F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA	O.I.	H.G.	S.X.
0.44	57.2	0.76	At4g36180	829775	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.43	55.3	0.76	At1g63470	842653	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBO	O.I.	H.G.	S.X.
0.41	52.4	0.76	At1g63480	842654	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV	O.I.	H.G.	S.X.
0.38	46.7	0.77	At1g20590	838648	cyclin, putative	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:endomembrane system, nucleus;MPOF	O.I.	H.G.	S.X.
0.38	46.7	0.77	At2g25270	817065	unknown protein	F:unknown;P:unknown;C:plasma membrane;POBM	O.I.	H.G.	S.X.
0.37	45.0	0.76	At4g31840	829313	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P	O.I.	H.G.	S.X.
0.37	45.0	0.77	At1g02690	839517	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	H.G.	S.X.
0.36	43.6	0.76	At5g17160	831580	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA	O.I.	H.G.	S.X.
0.36	43.6	0.77	At3g06030	819774	ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3)	NPK1-related protein kinase 3	O.I.	H.G.	S.X.
0.32	35.7	0.77	At1g76540	843987	CDKB2	Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling.	O.I.	H.G.	S.X.
0.32	35.7	0.77	At3g12870	820470	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.31	33.8	0.78	At3g19590	821496	WD-40 repeat family protein / mitotic checkpoint protein, putative	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA	O.I.	H.G.	S.X.
0.29	30.3	0.76	At1g75640	843899	leucine-rich repeat family protein / protein kinase family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.29	30.3	0.78	At4g26760	828783	MAP65-2	F:molecular_function unknown;P:anaphase;C:cortical microtubule, preprophase band, phragmoplast;MOBFPAV	O.I.	H.G.	S.X.
0.29	30.3	0.77	At2g01210	814649	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast stroma, chloroplast, plasma membrane, plant-type cell wall;PMOBFVA	O.I.	H.G.	S.X.
0.28	30.3	0.78	At3g22790	821850	kinase interacting family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV	O.I.	H.G.	S.X.
0.28	30.3	0.77	At3g01410	821319	RNase H domain-containing protein	F:ribonuclease H activity, nuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POBAM	O.I.	H.G.	S.X.
0.28	30.3	0.76	At1g10780	837621	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.28	30.3	0.78	At5g43990	834422	SUVR2	Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.	O.I.	H.G.	S.X.
0.27	26.2	0.76	At3g25980	822195	mitotic spindle checkpoint protein, putative (MAD2)	F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP	O.I.	H.G.	S.X.
0.26	24.4	0.78	At2g27040	817246	AGO4 (ARGONAUTE 4)	AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.	O.I.	H.G.	S.X.
0.25	22.6	0.76	At1g09450	837468	haspin-related	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.22	17.5	0.77	At1g21880	838790	LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)	F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOF	O.I.	H.G.	S.X.
0.21	15.8	0.77	At1g07370	837249	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.	O.I.	H.G.	S.X.
0.20	14.4	0.77	At3g62300	825403	agenet domain-containing protein	F:RNA binding;P:unknown;C:cellular_component unknown;PMOB	O.I.	H.G.	S.X.
0.19	12.7	0.77	At5g13520	831196	peptidase M1 family protein	F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP	O.I.	H.G.	S.X.
0.18	11.4	0.80	At5g51590	835233	DNA-binding protein-related	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOVB	O.I.	H.G.	S.X.
0.18	11.4	0.78	At4g33130	829450	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.17	10.2	0.76	At2g29570	817506	PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2)	Functionally interacts with POLH to repair DNA damaged by UVB damage.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.9 99.8 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
61.4 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.8 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.6 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.8 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.9 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.6 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.9 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
50.1 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
49.8 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
49.7 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.9 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.1 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.5 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.4 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.2 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.8 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.8 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.4 99.8 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
39.2 99.8 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
31.2 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.0 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.2 99.7 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
27.2 99.7 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.0 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.0 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.0 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.6 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.9 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.2 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.2 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.8 99.5 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
17.7 99.5 E-MEXP-807-raw-cel-1173273223
17.3 99.5 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.2 99.4 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
15.0 99.4 E-MEXP-807-raw-cel-1173273252
14.3 99.4 E-MEXP-807-raw-cel-1173273144
13.8 99.4 E-MEXP-807-raw-cel-1173273060
13.3 99.4 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.9 99.3 E-MEXP-807-raw-cel-1173273170
12.5 99.3 E-MEXP-807-raw-cel-1173273116
12.4 99.3 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.4 99.3 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.4 99.2 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
9.9 99.1 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
9.7 99.1 E-MEXP-807-raw-cel-1173273196

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
61.9	99.8	GSM133760	Lindsey_1-12_heart-stage-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
61.4	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.8	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.6	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.8	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.9	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
52.6	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.9	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
50.1	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
49.8	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
49.7	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.9	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.1	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.5	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.4	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.2	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.0	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.8	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.8	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.4	99.8	GSM311279	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
39.2	99.8	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
31.2	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.0	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.2	99.7	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
27.2	99.7	GSM133757	Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.0	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.0	99.6	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.0	99.6	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.6	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
23.9	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.2	99.6	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.2	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
17.8	99.5	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
17.7	99.5	E-MEXP-807-raw-cel-1173273223
17.3	99.5	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.2	99.4	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
15.0	99.4	E-MEXP-807-raw-cel-1173273252
14.3	99.4	E-MEXP-807-raw-cel-1173273144
13.8	99.4	E-MEXP-807-raw-cel-1173273060
13.3	99.4	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.9	99.3	E-MEXP-807-raw-cel-1173273170
12.5	99.3	E-MEXP-807-raw-cel-1173273116
12.4	99.3	GSM133774	Lindsey_1-26_torpedo-meristem_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.4	99.3	GSM284393	Arabidopsis GCE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.4	99.2	GSM131318	AtGen_6-3322_Saltstress-Roots-3.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
9.9	99.1	GSM184918	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
9.7	99.1	E-MEXP-807-raw-cel-1173273196

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 2 GO:0006275 Any process that modulates the frequency, rate or extent of DNA replication.
0.118 2 GO:0007094 A signal transduction based surveillance mechanism that ensures the fidelity of cell division by preventing the premature advance of cells from metaphase to anaphase prior to the successful attachment of kinetochores to spindle microtubules (spindle assembly).
0.065 1 GO:0019370 The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid.

SF	Genes	GO ID	Process Name
0.125	2	GO:0006275	Any process that modulates the frequency, rate or extent of DNA replication.
0.118	2	GO:0007094	A signal transduction based surveillance mechanism that ensures the fidelity of cell division by preventing the premature advance of cells from metaphase to anaphase prior to the successful attachment of kinetochores to spindle microtubules (spindle assembly).
0.065	1	GO:0019370	The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.071 2 03430 Mismatch repair
0.060 2 03030 DNA replication
0.059 2 03410 Base excision repair

SF	Genes	KEGG ID	Pathway name
0.071	2	03430	Mismatch repair
0.060	2	03030	DNA replication
0.059	2	03410	Base excision repair

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g50110
Gene name	branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)
Module size	30 genes
NF	0.30
%ile	36.6

Co-expression analysis

Gene ID At1g50110 Gene name branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) Module size 30 genes NF 0.30 %ile 36.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.071203430Mismatch repair0.060203030DNA replication0.059203410Base excision repair

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g50110

Gene name branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)

Module size 30 genes

NF 0.30

%ile 36.6

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.071 2 03430 Mismatch repair
0.060 2 03030 DNA replication
0.059 2 03410 Base excision repair

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays