CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g49820

Gene name ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)

Module size 68 genes

NF 0.17

%ile 13.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At1g49820 841405 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) encodes 5-methylthioribose kinase, involved in methionine cycle O.I. H.G. S.X.
0.38 46.7 0.88 At3g53610 824529 ATRAB8 GTPase AtRAB8 (atrab8) O.I. H.G. S.X.
0.36 43.6 0.88 At1g50940 841516 ETFALPHA (electron transfer flavoprotein alpha) Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis. Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness. O.I. H.G. S.X.
0.36 43.6 0.87 At5g63680 836488 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:plasma membrane;BOMPFA O.I. H.G. S.X.
0.31 33.8 0.88 At2g01710 814700 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAV O.I. H.G. S.X.
0.28 30.3 0.87 At1g78150 844151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFM O.I. H.G. S.X.
0.27 26.2 0.88 At4g26620 828769 sucrase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA O.I. H.G. S.X.
0.26 24.4 0.86 At2g44680 819076 CKB4 (CASEIN KINASE II BETA SUBUNIT 4) Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock. O.I. H.G. S.X.
0.25 22.6 0.88 At4g02980 828120 ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1) auxin binding protein involved in cell elongation and cell division O.I. H.G. S.X.
0.24 20.7 0.86 At2g16460 816144 metal ion binding F:metal ion binding;P:biological_process unknown;C:mitochondrion, plasma membrane;MFPOB O.I. H.G. S.X.
0.23 19.3 0.87 At1g44960 841061 - F:unknown;P:biological_process unknown;C:plasma membrane;BOPAM O.I. H.G. S.X.
0.22 17.5 0.87 At3g49390 824101 CID10 RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins. O.I. H.G. S.X.
0.22 17.5 0.87 At5g35080 833459 protein binding F:protein binding;P:biological_process unknown;C:endomembrane system;MFOP O.I. H.G. S.X.
0.22 17.5 0.86 At2g02370 814768 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFA O.I. H.G. S.X.
0.20 14.4 0.86 At3g54610 824626 GCN5 Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14. O.I. H.G. S.X.
0.20 14.4 0.86 At2g17380 816245 AP19 Encodes clathrin assembly protein AP19. O.I. H.G. S.X.
0.19 12.7 0.87 At1g62880 842589 cornichon family protein F:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPO O.I. H.G. S.X.
0.19 12.7 0.86 At2g01350 814663 QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli. O.I. H.G. S.X.
0.18 11.4 0.86 At2g25280 817066 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFP O.I. H.G. S.X.
0.18 11.4 0.88 At3g48170 823972 ALDH10A9 Arabidopsis thaliana putative betaine aldehyde dehydrogenase O.I. H.G. S.X.
0.18 11.4 0.85 At2g16950 816198 TRN1 (TRANSPORTIN 1) Nuclear import receptor for AtGRP7. O.I. H.G. S.X.
0.18 11.4 0.85 At3g01300 820989 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.18 11.4 0.85 At2g03690 814897 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein Ubiquinone biosynthesis protein COQ4 homolog. O.I. H.G. S.X.
0.17 10.2 0.87 At3g52200 824385 LTA3 dihydrolipoamide S-acetyltransferase (LTA3) mRNA, nuclear O.I. H.G. S.X.
0.17 10.2 0.87 At4g34270 829577 TIP41-like family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.17 10.2 0.86 At4g02860 828159 catalytic F:catalytic activity;P:biosynthetic process;C:cellular_component unknown;BOMFPA O.I. H.G. S.X.
0.17 10.2 0.88 At4g30480 829171 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:cellular_component unknown;MOPFBAV O.I. H.G. S.X.
0.17 10.2 0.85 At5g47080 834754 CKB1 Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)). O.I. H.G. S.X.
0.17 10.2 0.85 At3g29160 822566 AKIN11 (Arabidopsis SNF1 kinase homolog 11) encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1. O.I. H.G. S.X.
0.17 10.2 0.86 At2g17390 816246 AKR2B (ANKYRIN REPEAT-CONTAINING 2B) Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. O.I. H.G. S.X.
0.17 10.2 0.86 At5g58290 835941 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA, O.I. H.G. S.X.
0.16 8.8 0.86 At2g18250 816341 ATCOAD (4-phosphopantetheine adenylyltransferase) At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of dephospho-CoA from pantetheine 4'-phosphate. The enzyme is involved in coenzyme A biosynthesis. O.I. H.G. S.X.
0.16 8.8 0.87 At1g15370 838106 - F:molecular_function unknown;P:transport;C:unknown;POF O.I. H.G. S.X.
0.16 8.8 0.85 At2g22120 816746 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV O.I. H.G. S.X.
0.16 8.8 0.86 At1g20110 838600 zinc finger (FYVE type) family protein F:phosphoinositide binding;P:signal transduction;C:unknown;MFOPBVA O.I. H.G. S.X.
0.15 7.8 0.85 At1g20575 838646 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative F:elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;BOAMFPV O.I. H.G. S.X.
0.15 7.8 0.86 At2g20420 816561 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative F:succinate-CoA ligase (GDP-forming) activity, ATP binding;P:response to cadmium ion, metabolic process;C:mitochondrion;OBMFAP O.I. H.G. S.X.
0.15 7.8 0.86 At4g34960 829648 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:Golgi apparatus;BOMFPAV O.I. H.G. S.X.
0.15 7.8 0.86 At5g38830 833874 tRNA synthetase class I (C) family protein F:cysteine-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, cysteinyl-tRNA aminoacylation;C:cytoplasm;OBMFAPV O.I. H.G. S.X.
0.15 7.8 0.86 At1g71860 843516 PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress. O.I. H.G. S.X.
0.15 7.8 0.86 At2g44610 819069 RAB6A Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant. O.I. H.G. S.X.
0.15 7.8 0.87 At4g26310 828737 elongation factor P (EF-P) family protein F:translation elongation factor activity;P:translational elongation;C:unknown;BOPA O.I. H.G. S.X.
0.15 7.8 0.85 At5g49830 835046 - F:unknown;P:unknown;C:plasma membrane;MFPOV O.I. H.G. S.X.
0.14 6.8 0.86 At2g43070 818909 protease-associated (PA) domain-containing protein F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBFA O.I. H.G. S.X.
0.14 6.8 0.86 At2g44100 819016 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) GDP dissociation inhibitor involved in vesicular membrane traffic O.I. H.G. S.X.
0.14 6.8 0.85 At4g21450 826300 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBV O.I. H.G. S.X.
0.14 6.8 0.85 At5g09920 830853 NRPB4 Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4) O.I. H.G. S.X.
0.14 6.8 0.86 At1g51730 841598 RWD domain-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. H.G. S.X.
0.13 5.8 0.86 At1g27000 839590 bZIP family transcription factor F:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POBM O.I. H.G. S.X.
0.13 5.8 0.85 At5g59950 836117 RNA and export factor-binding protein, putative F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBVA O.I. H.G. S.X.
0.13 5.8 0.86 At3g62970 825472 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MPOFB O.I. H.G. S.X.
0.13 5.8 0.86 At1g52420 841673 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAPFM O.I. H.G. S.X.
0.13 5.8 0.86 At4g38240 829981 CGL1 (COMPLEX GLYCAN LESS 1) Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis. O.I. H.G. S.X.
0.13 5.8 0.86 At5g19680 832088 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. H.G. S.X.
0.12 4.9 0.86 At2g25910 817132 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein F:3'-5' exonuclease activity, RNA binding, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMPF O.I. H.G. S.X.
0.12 4.9 0.87 At4g14710 827122 acireductone dioxygenase [iron(II)-requiring]/ metal ion binding F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO O.I. H.G. S.X.
0.12 4.9 0.86 At2g18040 816316 PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds O.I. H.G. S.X.
0.12 4.9 0.85 At5g54430 835531 universal stress protein (USP) family protein Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase. O.I. H.G. S.X.
0.12 4.9 0.86 At3g55530 824718 SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1) Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA. O.I. H.G. S.X.
0.12 4.9 0.86 At3g54300 824597 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal. O.I. H.G. S.X.
0.12 4.9 0.85 At4g38800 830035 ATMTN1 F:methylthioadenosine nucleosidase activity, catalytic activity;P:nucleoside metabolic process;C:plasma membrane;BOP O.I. H.G. S.X.
0.12 4.9 0.86 At5g17020 831565 XPO1A Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes. O.I. H.G. S.X.
0.11 4.1 0.85 At2g04900 815037 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;BOMPF O.I. H.G. S.X.
0.11 4.1 0.86 At4g24490 828551 protein prenyltransferase F:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAV O.I. H.G. S.X.
0.10 3.4 0.86 At5g51510 835225 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.10 3.4 0.87 At4g39520 830106 GTP-binding protein, putative F:GTP binding;P:unknown;C:intracellular;BOMAFP O.I. H.G. S.X.
0.09 2.8 0.86 At2g01270 814654 AtQSOX2 (quiescin-sulfhydryl oxidase 2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain. O.I. H.G. S.X.
0.09 2.8 0.86 At1g08620 837384 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At1g49820	841405	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	encodes 5-methylthioribose kinase, involved in methionine cycle	O.I.	H.G.	S.X.
0.38	46.7	0.88	At3g53610	824529	ATRAB8	GTPase AtRAB8 (atrab8)	O.I.	H.G.	S.X.
0.36	43.6	0.88	At1g50940	841516	ETFALPHA (electron transfer flavoprotein alpha)	Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis. Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness.	O.I.	H.G.	S.X.
0.36	43.6	0.87	At5g63680	836488	pyruvate kinase, putative	F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:plasma membrane;BOMPFA	O.I.	H.G.	S.X.
0.31	33.8	0.88	At2g01710	814700	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAV	O.I.	H.G.	S.X.
0.28	30.3	0.87	At1g78150	844151	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PFM	O.I.	H.G.	S.X.
0.27	26.2	0.88	At4g26620	828769	sucrase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA	O.I.	H.G.	S.X.
0.26	24.4	0.86	At2g44680	819076	CKB4 (CASEIN KINASE II BETA SUBUNIT 4)	Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.	O.I.	H.G.	S.X.
0.25	22.6	0.88	At4g02980	828120	ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1)	auxin binding protein involved in cell elongation and cell division	O.I.	H.G.	S.X.
0.24	20.7	0.86	At2g16460	816144	metal ion binding	F:metal ion binding;P:biological_process unknown;C:mitochondrion, plasma membrane;MFPOB	O.I.	H.G.	S.X.
0.23	19.3	0.87	At1g44960	841061	-	F:unknown;P:biological_process unknown;C:plasma membrane;BOPAM	O.I.	H.G.	S.X.
0.22	17.5	0.87	At3g49390	824101	CID10	RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins.	O.I.	H.G.	S.X.
0.22	17.5	0.87	At5g35080	833459	protein binding	F:protein binding;P:biological_process unknown;C:endomembrane system;MFOP	O.I.	H.G.	S.X.
0.22	17.5	0.86	At2g02370	814768	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFA	O.I.	H.G.	S.X.
0.20	14.4	0.86	At3g54610	824626	GCN5	Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14.	O.I.	H.G.	S.X.
0.20	14.4	0.86	At2g17380	816245	AP19	Encodes clathrin assembly protein AP19.	O.I.	H.G.	S.X.
0.19	12.7	0.87	At1g62880	842589	cornichon family protein	F:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPO	O.I.	H.G.	S.X.
0.19	12.7	0.86	At2g01350	814663	QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)	At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.	O.I.	H.G.	S.X.
0.18	11.4	0.86	At2g25280	817066	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFP	O.I.	H.G.	S.X.
0.18	11.4	0.88	At3g48170	823972	ALDH10A9	Arabidopsis thaliana putative betaine aldehyde dehydrogenase	O.I.	H.G.	S.X.
0.18	11.4	0.85	At2g16950	816198	TRN1 (TRANSPORTIN 1)	Nuclear import receptor for AtGRP7.	O.I.	H.G.	S.X.
0.18	11.4	0.85	At3g01300	820989	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	H.G.	S.X.
0.18	11.4	0.85	At2g03690	814897	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein	Ubiquinone biosynthesis protein COQ4 homolog.	O.I.	H.G.	S.X.
0.17	10.2	0.87	At3g52200	824385	LTA3	dihydrolipoamide S-acetyltransferase (LTA3) mRNA, nuclear	O.I.	H.G.	S.X.
0.17	10.2	0.87	At4g34270	829577	TIP41-like family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.17	10.2	0.86	At4g02860	828159	catalytic	F:catalytic activity;P:biosynthetic process;C:cellular_component unknown;BOMFPA	O.I.	H.G.	S.X.
0.17	10.2	0.88	At4g30480	829171	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:unknown;C:cellular_component unknown;MOPFBAV	O.I.	H.G.	S.X.
0.17	10.2	0.85	At5g47080	834754	CKB1	Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)).	O.I.	H.G.	S.X.
0.17	10.2	0.85	At3g29160	822566	AKIN11 (Arabidopsis SNF1 kinase homolog 11)	encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1.	O.I.	H.G.	S.X.
0.17	10.2	0.86	At2g17390	816246	AKR2B (ANKYRIN REPEAT-CONTAINING 2B)	Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.	O.I.	H.G.	S.X.
0.17	10.2	0.86	At5g58290	835941	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,	O.I.	H.G.	S.X.
0.16	8.8	0.86	At2g18250	816341	ATCOAD (4-phosphopantetheine adenylyltransferase)	At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of dephospho-CoA from pantetheine 4'-phosphate. The enzyme is involved in coenzyme A biosynthesis.	O.I.	H.G.	S.X.
0.16	8.8	0.87	At1g15370	838106	-	F:molecular_function unknown;P:transport;C:unknown;POF	O.I.	H.G.	S.X.
0.16	8.8	0.85	At2g22120	816746	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV	O.I.	H.G.	S.X.
0.16	8.8	0.86	At1g20110	838600	zinc finger (FYVE type) family protein	F:phosphoinositide binding;P:signal transduction;C:unknown;MFOPBVA	O.I.	H.G.	S.X.
0.15	7.8	0.85	At1g20575	838646	dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative	F:elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;BOAMFPV	O.I.	H.G.	S.X.
0.15	7.8	0.86	At2g20420	816561	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	F:succinate-CoA ligase (GDP-forming) activity, ATP binding;P:response to cadmium ion, metabolic process;C:mitochondrion;OBMFAP	O.I.	H.G.	S.X.
0.15	7.8	0.86	At4g34960	829648	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:Golgi apparatus;BOMFPAV	O.I.	H.G.	S.X.
0.15	7.8	0.86	At5g38830	833874	tRNA synthetase class I (C) family protein	F:cysteine-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, cysteinyl-tRNA aminoacylation;C:cytoplasm;OBMFAPV	O.I.	H.G.	S.X.
0.15	7.8	0.86	At1g71860	843516	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.	O.I.	H.G.	S.X.
0.15	7.8	0.86	At2g44610	819069	RAB6A	Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant.	O.I.	H.G.	S.X.
0.15	7.8	0.87	At4g26310	828737	elongation factor P (EF-P) family protein	F:translation elongation factor activity;P:translational elongation;C:unknown;BOPA	O.I.	H.G.	S.X.
0.15	7.8	0.85	At5g49830	835046	-	F:unknown;P:unknown;C:plasma membrane;MFPOV	O.I.	H.G.	S.X.
0.14	6.8	0.86	At2g43070	818909	protease-associated (PA) domain-containing protein	F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBFA	O.I.	H.G.	S.X.
0.14	6.8	0.86	At2g44100	819016	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	GDP dissociation inhibitor involved in vesicular membrane traffic	O.I.	H.G.	S.X.
0.14	6.8	0.85	At4g21450	826300	vesicle-associated membrane family protein / VAMP family protein	F:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBV	O.I.	H.G.	S.X.
0.14	6.8	0.85	At5g09920	830853	NRPB4	Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4)	O.I.	H.G.	S.X.
0.14	6.8	0.86	At1g51730	841598	RWD domain-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	H.G.	S.X.
0.13	5.8	0.86	At1g27000	839590	bZIP family transcription factor	F:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POBM	O.I.	H.G.	S.X.
0.13	5.8	0.85	At5g59950	836117	RNA and export factor-binding protein, putative	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBVA	O.I.	H.G.	S.X.
0.13	5.8	0.86	At3g62970	825472	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MPOFB	O.I.	H.G.	S.X.
0.13	5.8	0.86	At1g52420	841673	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAPFM	O.I.	H.G.	S.X.
0.13	5.8	0.86	At4g38240	829981	CGL1 (COMPLEX GLYCAN LESS 1)	Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.	O.I.	H.G.	S.X.
0.13	5.8	0.86	At5g19680	832088	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	O.I.	H.G.	S.X.
0.12	4.9	0.86	At2g25910	817132	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein	F:3'-5' exonuclease activity, RNA binding, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMPF	O.I.	H.G.	S.X.
0.12	4.9	0.87	At4g14710	827122	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO	O.I.	H.G.	S.X.
0.12	4.9	0.86	At2g18040	816316	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)	phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds	O.I.	H.G.	S.X.
0.12	4.9	0.85	At5g54430	835531	universal stress protein (USP) family protein	Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	O.I.	H.G.	S.X.
0.12	4.9	0.86	At3g55530	824718	SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1)	Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA.	O.I.	H.G.	S.X.
0.12	4.9	0.86	At3g54300	824597	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.	O.I.	H.G.	S.X.
0.12	4.9	0.85	At4g38800	830035	ATMTN1	F:methylthioadenosine nucleosidase activity, catalytic activity;P:nucleoside metabolic process;C:plasma membrane;BOP	O.I.	H.G.	S.X.
0.12	4.9	0.86	At5g17020	831565	XPO1A	Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes.	O.I.	H.G.	S.X.
0.11	4.1	0.85	At2g04900	815037	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;BOMPF	O.I.	H.G.	S.X.
0.11	4.1	0.86	At4g24490	828551	protein prenyltransferase	F:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAV	O.I.	H.G.	S.X.
0.10	3.4	0.86	At5g51510	835225	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.10	3.4	0.87	At4g39520	830106	GTP-binding protein, putative	F:GTP binding;P:unknown;C:intracellular;BOMAFP	O.I.	H.G.	S.X.
0.09	2.8	0.86	At2g01270	814654	AtQSOX2 (quiescin-sulfhydryl oxidase 2)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.	O.I.	H.G.	S.X.
0.09	2.8	0.86	At1g08620	837384	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.0 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.9 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.5 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.0 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.5 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.0 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.3 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.7 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.2 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.4 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.3 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.3 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.8 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.2 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.7 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.2 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.0 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.7 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.7 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.2 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.9 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.9 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
30.7 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.3 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.2 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
22.9 99.6 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
22.5 99.6 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
17.9 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.1 99.5 GSM311278 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
16.9 99.5 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
16.4 99.5 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
16.2 99.5 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
15.2 99.4 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
15.1 99.4 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.6 99.4 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.1 99.3 GSM284390 Arabidopsis GPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
11.5 99.3 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.5 99.2 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.8 99.1 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.8 99.0 E-ATMX-35-raw-cel-1574334816
8.8 99.0 GSM311277 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
57.0	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
52.9	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.2	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.5	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.0	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.5	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.0	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.3	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
44.7	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
44.2	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.4	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.3	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.3	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
42.8	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.2	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.7	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.2	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.0	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.7	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.7	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.2	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.9	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.9	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
30.7	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.3	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.2	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
22.9	99.6	GSM142738	DH001_ATH1_A5-BCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
22.5	99.6	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
17.9	99.5	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.1	99.5	GSM311278	Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
16.9	99.5	GSM284391	Arabidopsis GPE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
16.4	99.5	GSM142737	DH001_ATH1_A4-UNM2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
16.2	99.5	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
15.2	99.4	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
15.1	99.4	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.6	99.4	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.1	99.3	GSM284390	Arabidopsis GPE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
11.5	99.3	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.5	99.2	GSM133774	Lindsey_1-26_torpedo-meristem_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.8	99.1	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.8	99.0	E-ATMX-35-raw-cel-1574334816
8.8	99.0	GSM311277	Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.079 3 GO:0019509 The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine.
0.048 2 GO:0000059 The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins.
0.038 2 GO:0006486 The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.

SF	Genes	GO ID	Process Name
0.079	3	GO:0019509	The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine.
0.048	2	GO:0000059	The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins.
0.038	2	GO:0006486	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.041 2 00510 N-Glycan biosynthesis
0.034 4 01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
0.031 2 00020 Citrate cycle (TCA cycle)

SF	Genes	KEGG ID	Pathway name
0.041	2	00510	N-Glycan biosynthesis
0.034	4	01064	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
0.031	2	00020	Citrate cycle (TCA cycle)

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g49820
Gene name	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)
Module size	68 genes
NF	0.17
%ile	13.5

Co-expression analysis

Gene ID At1g49820 Gene name ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) Module size 68 genes NF 0.17 %ile 13.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.041200510N-Glycan biosynthesis0.034401064Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid0.031200020Citrate cycle (TCA cycle)

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g49820

Gene name ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)

Module size 68 genes

NF 0.17

%ile 13.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.041 2 00510 N-Glycan biosynthesis
0.034 4 01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
0.031 2 00020 Citrate cycle (TCA cycle)

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays