Co-expression analysis

Gene ID At1g45090
Gene name transposable element gene
Module size 58 genes
NF 0.25
%ile 27.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g45090841076transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.77At2g18610816376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.90.77At5g44760834505C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.4253.90.75At1g44930--O.I.H.G.S.X.
0.4050.80.77At2g09840815440-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.80.75At1g35030840388unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3948.40.73At3g42910823340transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3745.00.75At2g10070815464transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3745.00.75At1g58265842195cytochrome P450-relatedF:electron carrier activity, monooxygenase activity, iron ion binding, heme binding;P:biological_process unknown;C:cellular_component unknown;PMFBOO.I.H.G.S.X.
0.3541.60.77At5g20770832200transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3541.60.73At3g23680821948F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.80.78At2g10870815550transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.74At1g296503766843transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.74At4g088303770163transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.76At4g35710829723unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3338.10.74At3g30480822761transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.75At3g427103769476transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.75At1g43730840963-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3133.80.80At2g14390815926unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFO.I.H.G.S.X.
0.3032.10.75At5g33390833329glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BMOPFVAO.I.H.G.S.X.
0.3032.10.76At1g24370839054transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3032.10.73At4g09880826578unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2930.30.77At3g32140822978transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.74At5g290303770866-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.74At1g353703766940transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.77At2g072303768513transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.78At4g075803770371transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.73At4g086503770129transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2726.20.74At4g086003770175transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2624.40.73At3g28170822443unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2624.40.75At4g079203770071transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2522.60.75At3g33073823095transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2522.60.76At4g055103769818transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2522.60.73At2g09910815448transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2522.60.73At3g52830824449-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.H.G.S.X.
0.2420.70.75At3g29260822582short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.2420.70.74At1g087353766684transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.73At1g269903766802transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.76At2g21680816706-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.
0.2319.30.75At2g064103767943transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2319.30.75At2g24920817030transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2217.50.73At1g38950840692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.2217.50.76At2g29600817509kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBVOAFO.I.H.G.S.X.
0.2115.80.75At1g20400838629myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVAO.I.H.G.S.X.
0.2115.80.73At3g30320822732unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2115.80.73At2g166703768263transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2014.40.79At3g22140--O.I.H.G.S.X.
0.2014.40.74At1g439603767332transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1912.70.73At1g423603767241transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1912.70.73At5g369903771337transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1811.40.74At2g12610815735transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1710.20.73At2g34110817972-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1710.20.73At2g05030815051transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.168.80.76At1g35860840488TOC75-I (translocon outer membrane complex 75-I)TOC75 pseudogene due to a 5.4-kb gypsy/Ty3-related retrotransposon inserted at the 5' end of the geneO.I.H.G.S.X.
0.168.80.76At2g255503767854transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.168.80.74At2g07630815335transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.74At3g31940822936transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.135.80.74At2g32350817796-F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;POMVFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.099.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
65.299.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
61.299.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
57.199.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
54.899.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
53.099.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.699.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.299.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.499.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.399.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.899.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.799.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.099.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.799.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.099.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.999.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.399.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.899.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
38.499.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.299.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.699.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.499.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.999.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.799.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.399.7GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
25.599.7GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
23.499.6GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
16.999.5GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.799.5E-MEXP-1443-raw-cel-1581869573
16.699.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
15.799.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
15.399.4E-MEXP-807-raw-cel-1173273252
15.099.4GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.999.4GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
13.699.4E-MEXP-807-raw-cel-1173273144
13.599.4GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.399.4GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.699.3GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.899.2GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.899.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.199.1GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
8.899.0GSM184483Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.899.0E-MEXP-807-raw-cel-1173273116

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0131GO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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