CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g44350

Gene name ILL6

Module size 5 genes

NF 0.44

%ile 62.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.80 89.8 1.00 At1g44350 841026 ILL6 encodes a protein similar to IAA amino acid conjugate hydrolase. O.I. H.G. S.X.
0.60 75.7 0.81 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF O.I. H.G. S.X.
0.46 59.8 0.85 At5g54170 835505 - F:molecular_function unknown;P:response to wounding;C:unknown;MPO O.I. H.G. S.X.
0.30 32.1 0.80 At5g42650 834273 AOS (ALLENE OXIDE SYNTHASE) Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity. O.I. H.G. S.X.
0.20 14.4 0.81 At5g27520 832812 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.80	89.8	1.00	At1g44350	841026	ILL6	encodes a protein similar to IAA amino acid conjugate hydrolase.	O.I.	H.G.	S.X.
0.60	75.7	0.81	At3g51450	824308	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF	O.I.	H.G.	S.X.
0.46	59.8	0.85	At5g54170	835505	-	F:molecular_function unknown;P:response to wounding;C:unknown;MPO	O.I.	H.G.	S.X.
0.30	32.1	0.80	At5g42650	834273	AOS (ALLENE OXIDE SYNTHASE)	Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.	O.I.	H.G.	S.X.
0.20	14.4	0.81	At5g27520	832812	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
82.6 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
68.5 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.0 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.7 99.8 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
59.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.7 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.4 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.7 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.5 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8 99.8 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
49.8 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.0 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.9 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.8 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.9 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.1 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.6 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.9 99.8 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
41.0 99.8 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
39.8 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.6 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.3 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.6 99.7 GSM266671 Arabidopsis, root cells, cortex, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
33.6 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
33.0 99.7 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
30.3 99.7 GSM131106 Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
30.0 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.7 99.7 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
28.8 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.4 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.1 99.7 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
27.9 99.7 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
27.4 99.7 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
26.9 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.7 99.7 GSM266669 Arabidopsis, root cells, cortex, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
25.8 99.7 GSM131105 Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
24.5 99.6 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
24.4 99.6 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
24.0 99.6 E-MEXP-1299-raw-cel-1519902871
22.2 99.6 E-MEXP-1797-raw-cel-1669768084
22.2 99.6 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
21.8 99.6 GSM142752 MJ001_ATH1_A3-jones-rh1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
21.5 99.6 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
21.4 99.6 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
20.2 99.6 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
19.9 99.6 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
18.8 99.5 GSM184913 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
18.6 99.5 GSM131108 Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
17.3 99.5 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
17.3 99.5 GSM226280 YHB_Rc50_replicate1 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
16.8 99.5 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
16.6 99.5 GSM231204 chl1 at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
16.1 99.5 GSM142776 AM002_ATH1_A1-MCCOR-WFA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
15.5 99.5 E-MEXP-1443-raw-cel-1581869745
14.5 99.4 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.4 99.4 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
14.3 99.4 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
14.0 99.4 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
12.9 99.3 E-MEXP-1299-raw-cel-1519902780
12.6 99.3 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.4 99.3 GSM128762 Mittler_2-6_wildtype+H2O2_Rep3_ATH1 GSE5530 Hydrogen peroxide stress and Zat12 over-expression in Arabidopsis.
12.4 99.3 GSM176880 AWP_Control_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
12.2 99.3 GSM226281 YHB_Rc50_replicate2 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
11.9 99.3 E-TABM-63-raw-cel-681137195
11.7 99.3 GSM231196 wild-type at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
11.4 99.3 E-TABM-63-raw-cel-681137052
11.1 99.2 GSM231202 chl1 at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
11.1 99.2 GSM158703 WT-ESTRADIOL-REP1 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
11.0 99.2 E-TABM-63-raw-cel-681137015
10.9 99.2 E-MEXP-1443-raw-cel-1581869803
10.7 99.2 GSM284388 Arabidopsis GMPE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.4 99.2 GSM25867 A Treated - 2 GSE1491 Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
10.4 99.2 E-TABM-63-raw-cel-681137124
10.4 99.2 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
10.2 99.2 Capper_1-10_E6_water
10.1 99.2 GSM231199 chl1 at T0, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
9.9 99.1 GSM128768 Mittler_2-12_Zat12+H2O2_Rep3_ATH1 GSE5530 Hydrogen peroxide stress and Zat12 over-expression in Arabidopsis.
9.8 99.1 GSM128760 Mittler_2-4_wildtype+H2O2_Rep1_ATH1 GSE5530 Hydrogen peroxide stress and Zat12 over-expression in Arabidopsis.
9.7 99.1 Rente_1-1_WS2-HO_Rep1_ATH1
9.5 99.1 GSM131107 Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
9.4 99.1 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.3 99.1 E-MEXP-513-raw-cel-829814446
9.3 99.1 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.2 99.1 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
9.2 99.1 GSM133402 Knight_2-4_sfr6-dk_Rep1_ATH1 GSE5710 Dark-induced gene expression in sfr6
9.1 99.1 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
9.0 99.1 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.0 99.1 GSM133400 Knight_2-3_sfr6-lt_Rep1_ATH1 GSE5710 Dark-induced gene expression in sfr6
8.9 99.0 GSM142753 MJ001_ATH1_A4-jones-rh2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
8.9 99.0 E-MEXP-1797-raw-cel-1669768039

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
82.6	99.9	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
68.5	99.9	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.0	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.7	99.8	GSM133962	Fukuda_1-7_6A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
59.8	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.7	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.4	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.7	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.5	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8	99.8	GSM133963	Fukuda_1-8_6B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
49.8	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.0	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.9	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
45.8	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.9	99.8	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.1	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.6	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.9	99.8	GSM284389	Arabidopsis GMPE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
41.0	99.8	GSM205185	protoplast_KIN10_rep2	GSE8257	Identification of KIN10-target genes in Arabidopsis mesophyll cells
39.8	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.6	99.8	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.3	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
34.6	99.7	GSM266671	Arabidopsis, root cells, cortex, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
33.6	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
33.0	99.7	GSM184895	Arabidopsis, root cells, cortex, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
30.3	99.7	GSM131106	Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
30.0	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.7	99.7	GSM133961	Fukuda_1-6_4B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
28.8	99.7	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.4	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.1	99.7	GSM265411	Arabidopsis, whole roots, -Fe, replicate 1	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
27.9	99.7	GSM265433	Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
27.4	99.7	GSM133960	Fukuda_1-5_4A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
26.9	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.7	99.7	GSM266669	Arabidopsis, root cells, cortex, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
25.8	99.7	GSM131105	Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
24.5	99.6	GSM266670	Arabidopsis, root cells, cortex, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
24.4	99.6	GSM265431	Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
24.0	99.6	E-MEXP-1299-raw-cel-1519902871
22.2	99.6	E-MEXP-1797-raw-cel-1669768084
22.2	99.6	GSM133965	Fukuda_1-10_8B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
21.8	99.6	GSM142752	MJ001_ATH1_A3-jones-rh1	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
21.5	99.6	GSM184896	Arabidopsis, root cells, cortex, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
21.4	99.6	GSM184897	Arabidopsis, root cells, cortex, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
20.2	99.6	GSM231195	wild-type at T0, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
19.9	99.6	GSM231198	wild-type at T0.5, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
18.8	99.5	GSM184913	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
18.6	99.5	GSM131108	Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
17.3	99.5	GSM265412	Arabidopsis, whole roots, -Fe, replicate 2	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
17.3	99.5	GSM226280	YHB_Rc50_replicate1	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
16.8	99.5	GSM231201	chl1 at T0, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
16.6	99.5	GSM231204	chl1 at T0.5, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
16.1	99.5	GSM142776	AM002_ATH1_A1-MCCOR-WFA	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
15.5	99.5	E-MEXP-1443-raw-cel-1581869745
14.5	99.4	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.4	99.4	GSM184838	Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8	GSE7639	Expression analysis of root developmental zones after treatment with salt
14.3	99.4	GSM265413	Arabidopsis, whole roots, -Fe, replicate 3	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
14.0	99.4	GSM176879	AWP_Control_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
12.9	99.3	E-MEXP-1299-raw-cel-1519902780
12.6	99.3	GSM133964	Fukuda_1-9_8A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.4	99.3	GSM128762	Mittler_2-6_wildtype+H2O2_Rep3_ATH1	GSE5530	Hydrogen peroxide stress and Zat12 over-expression in Arabidopsis.
12.4	99.3	GSM176880	AWP_Control_2	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
12.2	99.3	GSM226281	YHB_Rc50_replicate2	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
11.9	99.3	E-TABM-63-raw-cel-681137195
11.7	99.3	GSM231196	wild-type at T0.5, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
11.4	99.3	E-TABM-63-raw-cel-681137052
11.1	99.2	GSM231202	chl1 at T0.5, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
11.1	99.2	GSM158703	WT-ESTRADIOL-REP1	GSE6954	Identification of AGL24 downstream genes by using XVE inducible system
11.0	99.2	E-TABM-63-raw-cel-681137015
10.9	99.2	E-MEXP-1443-raw-cel-1581869803
10.7	99.2	GSM284388	Arabidopsis GMPE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.4	99.2	GSM25867	A Treated - 2	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
10.4	99.2	E-TABM-63-raw-cel-681137124
10.4	99.2	GSM184837	Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7	GSE7639	Expression analysis of root developmental zones after treatment with salt
10.2	99.2	Capper_1-10_E6_water
10.1	99.2	GSM231199	chl1 at T0, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
9.9	99.1	GSM128768	Mittler_2-12_Zat12+H2O2_Rep3_ATH1	GSE5530	Hydrogen peroxide stress and Zat12 over-expression in Arabidopsis.
9.8	99.1	GSM128760	Mittler_2-4_wildtype+H2O2_Rep1_ATH1	GSE5530	Hydrogen peroxide stress and Zat12 over-expression in Arabidopsis.
9.7	99.1	Rente_1-1_WS2-HO_Rep1_ATH1
9.5	99.1	GSM131107	Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
9.4	99.1	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.3	99.1	E-MEXP-513-raw-cel-829814446
9.3	99.1	GSM133967	Fukuda_1-12_10B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.2	99.1	GSM133983	Birnbaum_1-13_StageIII-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
9.2	99.1	GSM133402	Knight_2-4_sfr6-dk_Rep1_ATH1	GSE5710	Dark-induced gene expression in sfr6
9.1	99.1	GSM184846	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
9.0	99.1	GSM265425	Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.0	99.1	GSM133400	Knight_2-3_sfr6-lt_Rep1_ATH1	GSE5710	Dark-induced gene expression in sfr6
8.9	99.0	GSM142753	MJ001_ATH1_A4-jones-rh2	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
8.9	99.0	E-MEXP-1797-raw-cel-1669768039

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.333 1 GO:0019373
0.250 1 GO:0015866 The directed movement of ADP, adenosine diphosphate, into, out of, within or between cells.
0.250 1 GO:0015867 The directed movement of ATP, adenosine triphosphate, into, out of, within or between cells.

SF	Genes	GO ID	Process Name
0.333	1	GO:0019373
0.250	1	GO:0015866	The directed movement of ADP, adenosine diphosphate, into, out of, within or between cells.
0.250	1	GO:0015867	The directed movement of ATP, adenosine triphosphate, into, out of, within or between cells.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.059 1 00592 alpha-Linolenic acid metabolism
0.006 1 01070 Biosynthesis of plant hormones
0.002 1 01100 Metabolic pathways

SF	Genes	KEGG ID	Pathway name
0.059	1	00592	alpha-Linolenic acid metabolism
0.006	1	01070	Biosynthesis of plant hormones
0.002	1	01100	Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g44350
Gene name	ILL6
Module size	5 genes
NF	0.44
%ile	62.8

Co-expression analysis

Gene ID At1g44350 Gene name ILL6 Module size 5 genes NF 0.44 %ile 62.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.3331GO:00193730.2501GO:0015866The directed movement of ADP, adenosine diphosphate, into, out of, within or between cells.0.2501GO:0015867The directed movement of ATP, adenosine triphosphate, into, out of, within or between cells.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.059100592alpha-Linolenic acid metabolism0.006101070Biosynthesis of plant hormones0.002101100Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g44350

Gene name ILL6

Module size 5 genes

NF 0.44

%ile 62.8

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.333 1 GO:0019373
0.250 1 GO:0015866 The directed movement of ADP, adenosine diphosphate, into, out of, within or between cells.
0.250 1 GO:0015867 The directed movement of ATP, adenosine triphosphate, into, out of, within or between cells.

SF Genes KEGG ID Pathway name Link to KEGG
0.059 1 00592 alpha-Linolenic acid metabolism
0.006 1 01070 Biosynthesis of plant hormones
0.002 1 01100 Metabolic pathways

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays