Co-expression analysis

Gene ID At1g36590
Gene name transposable element gene
Module size 59 genes
NF 0.72
%ile 90.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8290.91.00At1g365903767015transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8693.10.97At2g07740815421transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8491.90.96At2g149503768119transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8290.90.96At2g13270815813transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8190.40.97At1g35770840482transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8190.40.96At1g478163767392transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8190.40.96At2g076503767967transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7989.10.95At1g346203766920transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7888.60.95At1g672403767657transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7888.60.96At2g109003768617transposable element genesimilarity to non-LTR retroelement proteinO.I.H.G.S.X.
0.7888.60.96At3g42120823184transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7788.00.95At3g452703769649transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.95At1g359953766969transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.96At2g143503768589transposable element genepseudogene of unknown proteinO.I.H.G.S.X.
0.7687.40.94At4g077503769978transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.95At1g360403766972transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.95At3g42390823235unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7586.90.94At3g22940821866F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7586.90.96At2g059603768174transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7486.10.95At2g14590815946transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7486.10.95At3g27980822422pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFMO.I.H.G.S.X.
0.7486.10.96At3g442703769630transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7486.10.96At2g13550815841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.H.G.S.X.
0.7385.50.94At1g325903766881transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.95At2g149303768116transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.94At1g526103767445transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.95At5g332503771111transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.96At2g07505815323unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7284.80.95At2g198403768331transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.95At5g28760832988transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.95At2g14570815944transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.97At3g07380819926unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7284.80.97At4g08820826453transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.93At2g075103768270transposable element genepseudogene of Ulp1 protease family proteinO.I.H.G.S.X.
0.7184.20.94At4g03750825677transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.94At2g10050815462transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.95At3g29080822555unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.7184.20.95At3g27800822400-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7184.20.95At5g29050833041unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7083.50.93At2g18930816410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7083.50.95At3g428363769502transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.94At4g075403770365transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.96At2g05030815051transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.95At2g073303767907transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.96At1g27870839680nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.6982.90.94At4g089703769794transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.94At2g11620815635unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.H.G.S.X.
0.6882.20.94At3g42680823288transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.95At4g042703769894transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.95At5g348003771185transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.96At2g34290817990protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOPFBVAO.I.H.G.S.X.
0.6680.10.94At1g312103766867transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.94At4g041703770474transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.94At5g28070832880unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.6579.60.95At4g056103770279transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.94At5g357103771292transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.95At3g30490822762transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.97At1g357603766961transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.94At2g29605817510unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
43.299.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
33.599.7GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
29.899.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.599.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.199.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.199.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.399.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.399.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.099.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.699.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.399.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.499.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.299.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.299.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.799.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.799.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.399.6GSM128753De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
18.999.5GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.999.5GSM128756De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
18.799.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.499.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.199.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.999.5GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.399.5GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.299.5GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
12.999.3GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
12.299.3GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.599.3GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
11.399.3GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.799.2GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.999.1GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.599.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.999.0GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0161GO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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